RNA id: TCONS_00020723


Basic Information

Item Value
RNA id TCONS_00020723
length 2447
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_010577
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17121986 ~ 17162843 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGAGACTGGAGCATTCAAGTGTATTCAGTTTTCCAGGCAAGGAAGCTACAAGGTATTAGTTTGGACCTGCTTAAATTTAAACGTATTTCGTTGGCGTTTTTGCAATAGTTTGCTTATTTGAATAGGCATTTGCATATTTCTGCGCTTTTATCGGTTCCTGCAGTAAGAGTCGCTTCTTCATCAACGCTTCTTCATTCTTACTCAGCATTCACGCGCAAGCTGTAATAGTCTTAACTCGTTGCATAAGGCTTTAACGAGTTAAACGTGGATATTGCCGTGTCATCGGGTCGCTAAACACTACTGACCTTTAAAATCAAGCCGTTAATTGTTTTGAAAGTCAGACATAGCTGGTGTTCATGCCCGATCTGCAGCGCTTCAGTTTTCCGTACCGTAGCATGAATTCTcctctccatcatcatcatcatcatcatcagcagcagcagcaccaaCAGCATCAGCACCCAGAAGGACCCGGTCATCCCGATTCTCCCTCCAGTTTACTCCCCGAGGCAGCGATCTTCGGAGCTCCCGATCCGTCCTCCTTTTTTCTCGGAGAACAACCCGTCCCTGCTGGTGTCACCCAATCCGCACTTGACCTTACTGCATCTTCCTACCTGCACTTTAGTCCATCCCTTCACTGGTCCCAACCTCCTCCACCTACAGCCATGGCATTAAGAAACGATCTGGGATCCAATATCAGCGTCCTAAAGACTCTCAATCTGCGGTTCCGTTGCTTTCTGGCTAAAGTGCATGAACTGGAGAGACGCAATAAAATATTGGAGTTACAGCTGCAGCAGGCTTTAGACAGCAATAACAAGGGTGGATGCACGGAGGATGGAAAGACCAAAGAAATTGGTGTGCAGACTGGCTTTATTGGGCCCATTGCTGTCCGGCCTGGGTCTTTATCCTTTCAAAACACTAACAACTCTGCCAAACGACCCACTACATTGTTTATGCCTTCTCTTACAACTGTCCTCAAGCTTGAACCTAATAAACCTGGGGATGAGACCACATCAGACCCGAATATTAATagaaacccaactatcacagtcaGTCTCTCAACCCCCACTACTGAGCCTGCTTCGGCCAACACAAACAACTCCAATAATACTCCACATGTAAGCAGTGTTGGAACCGGGACATCTCCAAACCCTCCTCCTCGCTTCCTCCCGGGCACTATCTGGTCCTACAACCACACACGGAAACTGGGAAGCGGAACAGAGACTCGGGTCACCAGTCCTGGAGTTTCGTGGGTCCACCCAGACGGAGTGGGTGTACAGATAGACACCATCACCCCAGAGATTAGAGCACTTTACAACGTCCTGGCCAAAATCAAAAGAGAGAGGGATGAGTACAAGAGAAGGTGGGAAGAGGAATACACTATGAGAATGGACATGGAACAAAGAATGAATGATCTGCAGGAGGACCTACAGGAGAGTGAAGTATGTCAGGATGAATTGGCCCTCAAGGTCCAACAGCTGAAAGCTGAACTTGTGCTCTTTAAAGGACTCATGAGCAATAACCTGTCGGAGCTGGACAGTAAAATCCAAGAGAAGGCCATGAAAGTGGACATGGACATCTGCAGACGCATTGACATCACAGCTCGTCTGTGTGATGTCGCCCAACAAAGAAACTGCGAAGATCCTATCAAGATCTTTAAGGTTCCAAGCCCTCAAAATGCCATCACCTCTCGTGCCCGTAAACAAGCCTCACAACCTGCCAATGGCAGTGAGACAGATGAGCCAGTCAGCACCTCTGAGAGTGATGGAGGTGGTGCGCGAGAGGATGAAGTTTGCACCCCTTCAACCCTCCAAATCAATGAGGAGATGCAAAGAATGTTGACACAACTGCGTGAGTGTGAGTTTGAAGATGATTGTGACTCTCTGGCTTGGGAAGAGACAGAAGAAACGCTTCTTCTCTGGGAGGATTTCCCAGGATGCACTGTAACAACAGACACCAGTCAGGGCGAGcagGAGGAGTGTTTGGAAAAGGTGATTAAGGACACAGAATGTCTTTTTAAGTCCAGGGAGAAGGAATATCAGGAGACTATAGATCAGATAGagTTGGAATTGGCCACAGCAAAGTCTGACATGAACCGTCATCTTCATGAGTACATGGAGATGTGCAGCATGAAGAGAGGACTGGATGTGCAGATGGAAACCTGCAGGAGACTCATCACCCAGAGTGGAAACAATAAATCCACTTCTCCTATACCTGGAGGGGGTATAGATACAAACGGAGAAACTGAGAGAGATAAAATGGAGGAAGGTGGAAGATAATGACGACAACTGATCCGACGATGGTGTTTGAAAGAAGAAAAAGTGTCTCTCATCTCTTCATGGCTTCATTTAACCTGGACTGGCTCTTCTTGTTGTGTTTCCGCATGTTTGTCCAGTCACTCTAGAGGGGGTAAATGgaattacattgtaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-308 Predicted to be located in intermediate filament. Orthologous to human IFFO1 (intermediate filament family orphan 1).

Ensembl:

ensembl_id ENSDART00000089386

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022136 lncRNA downstream 89175 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020715 lncRNA downstream 455229 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020707 lncRNA downstream 517906 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00022135 lncRNA downstream 531518 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020703 lncRNA downstream 592014 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00020732 lncRNA upstream 31230 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00020736 lncRNA upstream 72439 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00021793 lncRNA upstream 516260 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022137 lncRNA upstream 541987 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00020756 lncRNA upstream 541987 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00020721 mRNA downstream 5487 17102103 ~ 17116499 (-) True XLOC_010575
TCONS_00020719 mRNA downstream 49425 17060758 ~ 17072561 (-) False XLOC_010574
TCONS_00020720 mRNA downstream 49546 17062091 ~ 17072440 (-) True XLOC_010574
TCONS_00020718 mRNA downstream 65356 17007089 ~ 17056630 (-) False XLOC_010573
TCONS_00020717 mRNA downstream 360822 16757219 ~ 16761164 (-) True XLOC_010572
TCONS_00020726 mRNA upstream 350 17163193 ~ 17188294 (-) False XLOC_010578
TCONS_00020727 mRNA upstream 774 17163617 ~ 17175731 (-) True XLOC_010578
TCONS_00020728 mRNA upstream 26996 17189839 ~ 17197669 (-) False XLOC_010579
TCONS_00020729 mRNA upstream 29821 17192664 ~ 17197625 (-) False XLOC_010579
TCONS_00020730 mRNA upstream 30834 17193677 ~ 17197546 (-) False XLOC_010579
TCONS_00020722 other downstream 1800 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020716 other downstream 429719 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020706 other downstream 548456 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020689 other downstream 1307485 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 2725287 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020737 other upstream 82065 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020738 other upstream 84379 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020757 other upstream 543055 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020761 other upstream 1206071 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 1332697 18495540 ~ 18501141 (-) False XLOC_010598

Expression Profile

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