RNA id: TCONS_00020727


Basic Information

Item Value
RNA id TCONS_00020727
length 1566
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_010578
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17163193 ~ 17188294 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTAAGAGAGTGAATGGCTCATGGATGGGGTCTGTCTCTGTCCCATCATCCATCCCTCATGCCTTCCGCTCACAGCTATCCCCATCTGCTGACCTCAGCATTGCCGTCTTCCTCATCATCACGGGCGTGGTGTCAGTATTTGGGAATGGGTTAGTTTTGTTGGTTTATGGTCAGCGGAGAAAGAAGCTCAGAGCGCATGAGTTGATGACCATCAATCTGGCTGTGTGTGATTTCGGCTACAGTCTGCTGGGGGCGCCATGTATCATCATCTCGAGTCTGTCCCATGCCTGGATTTTTGGCGAAACAGGATGTATATGGTATGGAATTCAGGGCTTTGTTTTCGGGATTGGATCTCTCATCACCACCTGCCTCATATCCCTTGACCGCTGCTTTAAGATTTGCAGCTTTCGATATGGTCAGTGGGTTGAAAGAAAACATGCCTCTCTATCTGTCACTCTGGTTTGGATCTATACATTGTTCTGGGCCTCACTTCCCATGTTTGGCTTTGGTAGTTATGGCCCCGAACCATTTGGAACCAGCTGCACCATAAACTGGTGGAGGATGAACTCATCACTTACTGATAGAATCTATATATTCCTGATCCTGTCCCTCTGCTTTGGAGTTCCTACCCTCATTATCATCGCCTCATACCTTGCTATCGTAATCAGGGTGTATTGGTCTAGTCACATTTTGGCTTCAATCCCTTCATCAAACGTCACTCACAACAGCAAAGATCTTCGACTGACAAAGATCGCGGCAGTGGTGTGTTCCTCATTTCTGATTGCCTGGACTCCCTATGCGATTGTTTCACTCTACTCTGCTGTTATGGCCAGAGAGGAACAGCTTGGGGAAGATGGGGGAACGGCCATCCCGGGTGGAATAACAGGAACAGGGATTGGCCGTGGTGGAGGGTTCCCTGACGTCTATGCTTTTCCCTTCCTCATTAACTGGACCTCTTCAGAGCAATTCGGAGATGTTTTTGGCTCCTGGAGGAACATGACTTCAGGTCATTCTCATTCAGTAGGGCATCATGGTTCAAATGTAGGTTCTGGACATGGTGGAACAGGTGGACACCACTCACTTCCTGAGTCCATCTTGAAACCAGAGTTCTCACTTATCCCTGCTATTTTTGCCAAGTCTCACTGCATGATAAACCCCTTCATCTACCAGATCATGAACCGCGACTTCAGAGAGGACGTGTATGACCTCCTGTGCATGCGAGGAAAAGATGGAGAGAGAAGGAGGTCAAGAAGCACAGATGGAAGTGATTCTGATGGGCATCGTGGGAGCGTCACTCTCTCTTATATTCACAGCTGGAGGAGAAGAAGCACACCAACCAATCAGCCATCcgaaaaatgtgtgaaaaaagaGTCCTCTCGTAAGAGTAGAGGAAAAAGAGGGTCCTGTCAGGATAATAATTCCATTGGGTGGGCAACCTTAGATACAACAACCTTAGACACACAGGTCAACTTAGAAAGAGAGAAAGGGAAAGAGGTGGAAATAGAAACCCAAAAAGTTTTCAAAGAATCCtcttccagcagcttgttgacaGTCAAAGAGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007602 phototransduction biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-390 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; integument; nervous system; and testis.

Ensembl:

ensembl_id ENSDART00000183057

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022136 lncRNA downstream 130806 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020715 lncRNA downstream 496860 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020707 lncRNA downstream 559537 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00022135 lncRNA downstream 573149 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020703 lncRNA downstream 633645 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00020732 lncRNA upstream 18342 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00020736 lncRNA upstream 59551 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00021793 lncRNA upstream 503372 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022137 lncRNA upstream 529099 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00020756 lncRNA upstream 529099 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00020723 mRNA downstream 774 17121986 ~ 17162843 (-) False XLOC_010577
TCONS_00020725 mRNA downstream 1132 17122152 ~ 17162485 (-) True XLOC_010577
TCONS_00020721 mRNA downstream 47118 17102103 ~ 17116499 (-) True XLOC_010575
TCONS_00020719 mRNA downstream 91056 17060758 ~ 17072561 (-) False XLOC_010574
TCONS_00020720 mRNA downstream 91177 17062091 ~ 17072440 (-) True XLOC_010574
TCONS_00020728 mRNA upstream 14108 17189839 ~ 17197669 (-) False XLOC_010579
TCONS_00020729 mRNA upstream 16933 17192664 ~ 17197625 (-) False XLOC_010579
TCONS_00020730 mRNA upstream 17946 17193677 ~ 17197546 (-) False XLOC_010579
TCONS_00020731 mRNA upstream 18259 17193990 ~ 17200120 (-) False XLOC_010579
TCONS_00020733 mRNA upstream 19454 17195185 ~ 17197565 (-) True XLOC_010579
TCONS_00020724 other downstream 34151 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 43431 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020716 other downstream 471350 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020706 other downstream 590087 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020689 other downstream 1349116 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020737 other upstream 69177 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020738 other upstream 71491 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020757 other upstream 530167 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020761 other upstream 1193183 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 1319809 18495540 ~ 18501141 (-) False XLOC_010598

Expression Profile

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