RNA id: TCONS_00020728


Basic Information

Item Value
RNA id TCONS_00020728
length 4585
RNA type mRNA
GC content 0.37
exon number 11
gene id XLOC_010579
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17189839 ~ 17200120 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTCCAGGGGGCGTGGTCAATGCTATCGCACCAGATATAAATTAACCTCGTGTTCGTAATCAGTCCACTCACACCAAGTGTCAGGACGAACAGAGGCTTCTCACAAACGGTAAATTTAGTTATTTCATGTTTCAAATGCTTGAATTATTTAGTGTTTAATTATGTAGTCTTTGCTCAGATTGCGCTGGTGAAGCCTTTGCAAATGTTAGCAACTTTTAAATATATGTGCATGTTAATGGCATGGAGCAACATTTCTAATGAAAGCTGAGAGTTCATGCTCTTTAGAACTTCTAGCCTACATTTTCTGGCCAATTGGGAAATGCTTGAGTATGAATACAACAGGCTACTGTGAACTACAAATGTGTATGAACTTTTTGTTCACTCTCTATCTGTAGTTAGAGGTGTTGCAGTTTCACAACCTGTACTTTGTTCCCATAACGAAAGACGCCTATAATAACGTGTGAATTAATTACACCCTTTTGTTTTCCTTCCAGAGGACACAACCAAATCAGGCATAATGGTTAAAGTTGGTATTAACGGattcgGTCGCATTGGCCGTCTGGTGACCCGTGCTGCTTTCTTGACCAAGAAAGTGGAGATTGTGGCCATCAATGACCCATTCATTGACCTTGATTACATGGTTTACATGTTCCAGTACGACTCCACCCATGGAAAGTACAAGGGTGAGGTTAAGGCAGAAGGCGGCAAACTGGTCATTGATGGTCATGCAATCACAGTCTATAGCGAGAGGGACCCAGCCAATATTAAGTGGGGTGATGCAGGTGCTACTTATGTTGTGGAGTCTACTGGTGTCTTCACTACTATTGAGAAGGCTTCTGCTCACATTAAGGGTGGTGCAAAGAGAGTCATCATCTCTGCCCCAAGTGCAGATGCCCCCATGTTTGTCATGGGTGTCAACCATGAGAAATATGACAACTCTCTCACAGTTGTAAGCAATGCCTCCTGCACCACCAACTGCCTGGCTCCTTTGGCAAAGGTCATTAATGATAACTTTGTCATCGTTGAAGGTCTTATGAGCACTGTTCATGCCATCACAGCAACACAGAAGACCGTTGATGGGCCCTCTGGGAAGCTGTGGAGGGATGGCCGTGGTGCCAGTCAGAACATCATCCCAGCCTCCACTGGGGCTGCCAAGGCTGTAGGCAAAGTAATTCCTGAGCTCAATGGCAAGCTTACTGGTATGGCCTTCCGTGTCCCCACCCCCAATGTCTCTGTTGTGGATCTGACAGTCCGTCTTGAGAAACCTGCCAAGTATGATGAGATCAAGAAAGTCGTCAAGGCTGCAGCTGATGGGCCCATGAAAGGAATTCTGGGATACACGGAGCAccagGTTGTGTCCACTGACTTCAATGGGGATTGCCGTTCATCCATCTTTGACGCTGGTGCTGGTATTGCTCTCAACGATCACTTTGTCAAGCTGGTCACATGGTATGACAATGAGTTCGGTTACAGCAACCGTGTATGTGACCTGATGGCACACATGGCCTCCAAGGAGTAGATGTGACCCCtttgctgtttcttttttttgatACGCGACCATTCTCCCATCTGGTTGAATGTTTGCACCACGTGCCTGGAAGGAAATTACATGCTTAAATTGAAGaccaatattatttttatatactctGTTCTGTTTCGTGTGTGaggttaaaaataaatgttgactTCAAAGGCTTTTCTGTCTGTTAACAACTTGCGATGGAATAAAAGTCCTCTGTTtgtgagaaatggagaaaagCTGTCATTTGTTATTTCAATAGCTTGTTCGGTGCAATCATTAATCTTGGAGGGttcttattttaaagaatgttttctttttgaccagggtttttttttttttttttaaataaaccaagTCCTAACAGTTTACAGGTATGCATAATGGGGAAACTTAACTGACAAGCATCGGGTGGGGTCTTTTACTTTAGCCCATCTACTTTAATATGTTATTTAGAGCTAGATGGATAGTTTTATTACAAATAGTGACTACTACCAGCAATTTGCATAAGTGACTAAATGAACATTTTTGTGTAAATACTGGGGAAAACTTTAAAAGgaaagtttacccaaaactgatcCTTTCCAGGGTCAAATTTGATCCTAAGGGCTGGTATCTTGCAGGGTTTTGCCAACtgtaatcagacacacctgaacaagctaatcaatctTGCTGTAAGCTTTGTTGCAGGTGTTTAAGGAAAGTTAGAGCTGCACTTTGCCAGACTGAGTTTAGACCTTTTAGTGTCCTTCTGCCAAAATCTCAATCATATACTCTAGGTTGGTGGGGGAAAACATCTTTAGTAGaaacaaataattataatttattattttgtctcAAACCTGACCCATTTTCTCCTATGAACAAAGAGAATTGCTCCATTTGAGTATAGCGGTGTTAATAAATTAGGGGATGAGTAAATAACAGAATTTAGAATTTTAGTTAATgctttacaaaaacagtacataaTGTACTAACATTTAAAGCAGGAATGTCTaactgtgtgtctgtctgtcaaaTATTGTCGGCAGTGAAATATAACAAGCCAATAAACCTTGTCATGAGTAATTTCctaattcattaaataaaaaaaatattactttgaaTAGTAATAACTAATCCAGTGTAACTTTTTTTCAGATTGaaatttattgcaataaaaacaacacatgGTGGAATTCATTGCTAAACACACTAGTTAAACAGaatcttgcctttattcactCACCAGAGATCTTGTTTTCTGTCctctgtatttacatttttaaacttaatcTGACTAATTTTCATTGCAACCTTTAACTTTAGAtagtctctttttctttttgtaactTAACAAAACGTATGCAAACAAATATAAGGTTGCAATAAATTTGAAATGATAATCTCTAAACCGTTCTCAGATGGCAGGGTGGACCAAATCAAAGTTTTTTTTGGGACACTTTTGGCCAGCAGGACCTAGTTTGAGTATCTTTAAACCTTATATGGACACTTAACTCAAACCTTGACATTTTAACAGGAATTCATTAAGAAGTAATAATAATGTTCCCCCCAGAGACTGGGCAtgggataacttttttttttttcaaggtatacagtggtttgtaaaagtcaaggttttaaaaccatcaacaTGCTAAACATGCTATACTGCTAAACTGTTTCTacagtatatgtaagatttttttttatggttttaatttttttttaggacaacggtATCTTCGGCAGAAAATGTagccaaaaatgtcattttaatttgtaaagaaatttgtgtttttgaaactaatggagacagcagaagtcaatgattcatttgagttATTCAGTCTGACATGttcactgctccaaaatactttaaatgtttctcaaattaaaacatattgtgcttaaaagggaaaaaaaaagaagtttttttttttttacccaaacatttaaataatttattttaagtagTAATTACTATATTGTGAACccgtgatgtttttatccaaggttatcaaatCGTCAGAATCTTCTACCGGCCCATACCTAGTTATGAAGACCATTATACATTAACAAGTCATGAGTTTATATTGGTCAAGTTGCacttttacttaatattatttactttatatacaaGTTTAGCTGAAACTAAAGTTTTAATGTCAACAAACATGAGTAATTAAGTTAGCCATTTTTCACACACATATGACTTGTAAattgtttggtcacactttattttgatggtccgtctgttgaatttaagttacattagaTTACATTAGACTCATTaggttataagtagactgttagggtagggttaatgtaagttgacatgtacttgcaaagtttcttatagtcagttaaagaTCTGTTAAAGGAGCAATATACATTTGATGGAGTGGCCCTCCTAATATCTACAATAAAGTCTTTTGAAGCTAAAtatcaaacccaacaggaagtcagatttTTTTAACTTCCTCTGCTGAAAATGTGCAGTTtctgccatttccaggcgttgtattttaacaaacttctCCAAGGGATTTTAtcagatcaacaccaaaattgctTGTTGTAATCTAAAGGCCTGGTGGTGTCCATGGCGGCCTTTCCATCTTTGTTTCGCTATGAAACAGGAAGTTGCTATAACTCAGGCATCAGCCAAACCTGTTAATAGCGTCAAGCAAtttctaagtgtgaactcttgaaattgtgAAAATCTAGAGTTTTTGTTGAAAGGCGTGTGACAAATCTCAGTGTTTCGGCATGGAAAAGCAAGCAGTTATTACTCAGGCTTACTATGTCCAGTCTGCTCCAAATTCCGCACCATTGATTATAGTACTacactgaagacatctacatgtgAATATTCAATCGCagtcatagcaccacctgctgacagaagttCATTGTGTTCTGTCAGCGGTGAGCCCAGGTGCAAGGTCCCtttcattgctgcttgcagctttaatgcATGTACtattattgtgaagtgttaccaatTTTTGTATAAACTATCCTTTAATTAAGGTTTATTAAGACTCAAGTAAATTAATTGAAGTGtaatttaagtgatttt

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0006096 glycolytic process biological_process
GO:0035606 peptidyl-cysteine S-trans-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0050821 protein stabilization biological_process
GO:0006006 glucose metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0035605 peptidyl-cysteine S-nitrosylase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00710 Carbon fixation in photosynthetic organisms
ko04066 HIF-1 signaling pathway
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05010 Alzheimer disease
ko05415 Diabetic cardiomyopathy
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030115-1 Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; microtubule binding activity; and peptidyl-cysteine S-nitrosylase activity. Predicted to be involved in several processes, including glycolytic process; peptidyl-cysteine S-trans-nitrosylation; and protein stabilization. Predicted to act upstream of or within apoptotic process and glucose metabolic process. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; integument; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).

Ensembl:

ensembl_id ENSDART00000163606

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022136 lncRNA downstream 157028 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020715 lncRNA downstream 523082 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020707 lncRNA downstream 585759 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00022135 lncRNA downstream 599371 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020703 lncRNA downstream 659867 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00020736 lncRNA upstream 37613 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00021793 lncRNA upstream 481434 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022137 lncRNA upstream 507161 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00020756 lncRNA upstream 507161 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022138 lncRNA upstream 625778 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00020726 mRNA downstream 1545 17163193 ~ 17188294 (-) False XLOC_010578
TCONS_00020727 mRNA downstream 14108 17163617 ~ 17175731 (-) True XLOC_010578
TCONS_00020723 mRNA downstream 26996 17121986 ~ 17162843 (-) False XLOC_010577
TCONS_00020725 mRNA downstream 27354 17122152 ~ 17162485 (-) True XLOC_010577
TCONS_00020721 mRNA downstream 73340 17102103 ~ 17116499 (-) True XLOC_010575
TCONS_00020734 mRNA upstream 6582 17204251 ~ 17207754 (-) True XLOC_010580
TCONS_00020735 mRNA upstream 36871 17234540 ~ 17251898 (-) False XLOC_010581
TCONS_00020739 mRNA upstream 56820 17254489 ~ 17258111 (-) True XLOC_010584
TCONS_00020740 mRNA upstream 65358 17263027 ~ 17300030 (-) True XLOC_010585
TCONS_00020741 mRNA upstream 104783 17302452 ~ 17316440 (-) False XLOC_010586
TCONS_00020724 other downstream 60373 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 69653 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020716 other downstream 497572 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020706 other downstream 616309 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020689 other downstream 1375338 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020737 other upstream 47239 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020738 other upstream 49553 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020757 other upstream 508229 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020761 other upstream 1171245 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 1297871 18495540 ~ 18501141 (-) False XLOC_010598

Expression Profile

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