RNA id: TCONS_00020741


Basic Information

Item Value
RNA id TCONS_00020741
length 776
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_010586
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17302452 ~ 17347727 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACATCTCCCATTGGCAGTCATCAAAGCTTTGCTCCACCTTCTCCTGCTGCTCCTAAAACATCACCTGTCTCCACGTTCAACAGACCAGCAGGAAACAATGTTCCTTCAAAGGTGTCTGGCTCAGGCACAGGTTCAGGTCCAGGTGGAGCTCCTCTAACTATGAGAGAGGTGGAAGAACTGGAGAAAATGACCAAGGACTTTATTCAACACATGGACAAACATCCTCCTGTGATCACCTCCCCAGCAACAGAGGTGTGTGGTAAATGTGGAGAGACGCTGTCTAGATCTCAGCCAGCAGTGAGAGCAATGGATAAACTCTTCCACTCCCATTGTTTCTGCTGTGTGAGCTGCCAGCGCCCCCTGCAGGGCATGCAGTTCTATGATCGTGATGGCACACCTCAGTGCGAGGAATGCTACATGAGTTCTTTGTCCGTGTGTTCCCGCTGTGGGGAGCGCATCACAGATCGCGTCCTGAAAGCAATGGGTCAGTGTTTTCATGCTCACTGTTTCCTCTGCACCACCTGCAACTGCTCTCTGGAGGGAGCTCCTTTCATCACTGATGACGACAACAAACCCTACTGTGTCAAGGATTACCATCGGATTGCGCTCGCCCCCTTTCCATAGAGGCAGACGCTGATGGCTGTTACCCGCTGAACGGCAAAATCCTGTGCATGAAGTGCCACACCCAACGTAACAAGCAAGCCAAACAGTGATTTGTGGTAAGCTGCCACAAACCCAAAGCAAAATTGAAACagctgtactttaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0001725 stress fiber cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04510 Focal adhesion

ZFIN:

id description
ZDB-GENE-070928-18 Predicted to enable metal ion binding activity. Predicted to be involved in integrin-mediated signaling pathway and transforming growth factor beta receptor signaling pathway. Predicted to be active in cytoplasm; focal adhesion; and stress fiber. Orthologous to human ZYX (zyxin).

Ensembl:

ensembl_id ENSDART00000147615

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020736 lncRNA downstream 61614 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00020732 lncRNA downstream 104851 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00022136 lncRNA downstream 269641 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020715 lncRNA downstream 635695 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020707 lncRNA downstream 698372 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00021793 lncRNA upstream 362663 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022137 lncRNA upstream 388390 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00020756 lncRNA upstream 388390 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022138 lncRNA upstream 507007 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00022139 lncRNA upstream 821202 18137642 ~ 18140068 (-) True XLOC_010595
TCONS_00020740 mRNA downstream 2422 17263027 ~ 17300030 (-) True XLOC_010585
TCONS_00020739 mRNA downstream 44341 17254489 ~ 17258111 (-) True XLOC_010584
TCONS_00020735 mRNA downstream 50554 17234540 ~ 17251898 (-) False XLOC_010581
TCONS_00020734 mRNA downstream 94698 17204251 ~ 17207754 (-) True XLOC_010580
TCONS_00020731 mRNA downstream 102332 17193990 ~ 17200120 (-) False XLOC_010579
TCONS_00020744 mRNA upstream 160712 17477152 ~ 17541890 (-) False XLOC_010587
TCONS_00020745 mRNA upstream 161633 17478073 ~ 17525322 (-) True XLOC_010587
TCONS_00020746 mRNA upstream 232255 17548695 ~ 17578503 (-) False XLOC_010588
TCONS_00020747 mRNA upstream 233539 17549979 ~ 17577606 (-) False XLOC_010588
TCONS_00020748 mRNA upstream 234844 17551284 ~ 17577581 (-) False XLOC_010588
TCONS_00020738 other downstream 55089 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020737 other downstream 57405 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020724 other downstream 172986 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 182266 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020716 other downstream 610185 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020757 other upstream 389458 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020761 other upstream 1052474 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 1179100 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020763 other upstream 1180855 18497295 ~ 18501141 (-) False XLOC_010598
TCONS_00020764 other upstream 1181114 18497554 ~ 18501117 (-) True XLOC_010598

Expression Profile

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