RNA id: TCONS_00021793


Basic Information

Item Value
RNA id TCONS_00021793
length 462
lncRNA type sense_over
GC content 0.48
exon number 3
gene id XLOC_010591
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17671301 ~ 17699111 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTCACATGTGCTGTTGCAGTTCCTCCAGAGATATCAGGAGAGCAGACGTGTTCTGTGTGGGCTGTCACTGGACCTGCCTCCAGCAGCGATGTCACAGTGATTGACCCGGCCCGCTCCAATACTATACTGGATCAGTTCAGTCTTCCACCTACGTCCCCAGCATTATGCATCTGTGCTGTGCCCCCTACTGACGCTGGGACCCAGATTTCTAAAGGAAATGCAACATTTACTTTCATCACAGAACATAACTTTGGAGCACTCAGCAGCAGTCCAGTCTTTAGCCCAGACAAGATGGTTCTGACACTGTTGTTCAGGAGTGGCTTGACACAAGTAATGTCTATGAACAGCCAGACCTTTTGTGTCTTGCCTTCTTGTGCAAGATGTTAATGGTCACCTTTTGaacaactgtttaactgttttgaaCAACCATCTTCCCtatgaagctgcggtcacactgggc

Function

GO:

id name namespace
GO:0007257 activation of JUN kinase activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005078 MAP-kinase scaffold activity molecular_function
GO:0008432 JUN kinase binding molecular_function
GO:0030159 signaling receptor complex adaptor activity molecular_function
GO:0019894 kinesin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020736 lncRNA downstream 438265 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00020732 lncRNA downstream 481502 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00022136 lncRNA downstream 646292 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020715 lncRNA downstream 1012346 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020707 lncRNA downstream 1075023 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00022137 lncRNA upstream 22878 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00020756 lncRNA upstream 22878 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022138 lncRNA upstream 141495 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00022139 lncRNA upstream 455690 18137642 ~ 18140068 (-) True XLOC_010595
TCONS_00021794 lncRNA upstream 463465 18145417 ~ 18149149 (-) False XLOC_010596
TCONS_00020754 mRNA downstream 18509 17639896 ~ 17660594 (-) True XLOC_010590
TCONS_00020752 mRNA downstream 92220 17579915 ~ 17586883 (-) False XLOC_010589
TCONS_00020751 mRNA downstream 93033 17578607 ~ 17586070 (-) False XLOC_010589
TCONS_00020753 mRNA downstream 93035 17580872 ~ 17586068 (-) True XLOC_010589
TCONS_00020746 mRNA downstream 100600 17548695 ~ 17578503 (-) False XLOC_010588
TCONS_00020758 mRNA upstream 29263 17711215 ~ 17713859 (-) True XLOC_010593
TCONS_00020766 mRNA upstream 927026 18608978 ~ 18652646 (-) True XLOC_010600
TCONS_00020767 mRNA upstream 1007978 18689930 ~ 18702249 (-) False XLOC_010601
TCONS_00020768 mRNA upstream 1012878 18694830 ~ 18960333 (-) False XLOC_010601
TCONS_00020771 mRNA upstream 1277401 18959353 ~ 18960613 (-) True XLOC_010601
TCONS_00020738 other downstream 431740 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020737 other downstream 434056 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020724 other downstream 549637 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 558917 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020716 other downstream 986836 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020757 other upstream 23946 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020761 other upstream 686962 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 813588 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020763 other upstream 815343 18497295 ~ 18501141 (-) False XLOC_010598
TCONS_00020764 other upstream 815602 18497554 ~ 18501117 (-) True XLOC_010598

Expression Profile

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