RNA id: TCONS_00022138


Basic Information

Item Value
RNA id TCONS_00022138
length 780
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_010594
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17823447 ~ 17824848 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATAGAATAAAGTAAGCAAGGTGAGCGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGTTGGACAATGAAGAACCGACAGGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAACAGGGGCAGTCTACAAGTGACCGCCTAAAGATACtggaatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGACTCAGGCAAACTCTGCTTTCACTCTGCCCAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATCCGATCAGGCCCCAGAAGTGACTGTGGAAACTTGACTGGCCCTGGCTCGCATTGGCACACTAACTTAAGTCGTGAGAGTGAAAACACAGCTCTTGACTACATTTCCAGAGCTTGTGTCCACCTGGGTTTGACCTATGCATTTTAACTGTGACAAAGAATGGTGTTTTTACAAGTGACTGTCTGGTTAACACAGGAAGATATTAGAGGGTAGTATTCCCATGAACTGCGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTTAATCAGATAAATTTCTCTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGaaactgctgtttaaaaaaagatgatcAAAGTCCTTGTTAAGATGAtcagtttgtttaaatgtacatgttttattgtgtattatatGATGTATTGTCT

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process
GO:0003260 cardioblast migration biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020756 lncRNA downstream 116683 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022137 lncRNA downstream 116871 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00021793 lncRNA downstream 141495 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00020736 lncRNA downstream 582609 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00020732 lncRNA downstream 625846 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00022139 lncRNA upstream 312794 18137642 ~ 18140068 (-) True XLOC_010595
TCONS_00021794 lncRNA upstream 320569 18145417 ~ 18149149 (-) False XLOC_010596
TCONS_00020759 lncRNA upstream 321045 18145893 ~ 18150006 (-) False XLOC_010596
TCONS_00020760 lncRNA upstream 321410 18146258 ~ 18150003 (-) True XLOC_010596
TCONS_00022140 lncRNA upstream 648095 18472943 ~ 18501117 (-) False XLOC_010598
TCONS_00020758 mRNA downstream 109588 17711215 ~ 17713859 (-) True XLOC_010593
TCONS_00020755 mRNA downstream 124336 17671301 ~ 17699111 (-) False XLOC_010591
TCONS_00020754 mRNA downstream 162853 17639896 ~ 17660594 (-) True XLOC_010590
TCONS_00020752 mRNA downstream 236564 17579915 ~ 17586883 (-) False XLOC_010589
TCONS_00020751 mRNA downstream 237377 17578607 ~ 17586070 (-) False XLOC_010589
TCONS_00020766 mRNA upstream 784130 18608978 ~ 18652646 (-) True XLOC_010600
TCONS_00020767 mRNA upstream 865082 18689930 ~ 18702249 (-) False XLOC_010601
TCONS_00020768 mRNA upstream 869982 18694830 ~ 18960333 (-) False XLOC_010601
TCONS_00020771 mRNA upstream 1134505 18959353 ~ 18960613 (-) True XLOC_010601
TCONS_00020772 mRNA upstream 1200175 19025023 ~ 19026414 (-) False XLOC_010603
TCONS_00020757 other downstream 117460 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020738 other downstream 576084 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020737 other downstream 578400 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020724 other downstream 693981 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 703261 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020761 other upstream 544066 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 670692 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020763 other upstream 672447 18497295 ~ 18501141 (-) False XLOC_010598
TCONS_00020764 other upstream 672706 18497554 ~ 18501117 (-) True XLOC_010598
TCONS_00020765 other upstream 755876 18580724 ~ 18583338 (-) True XLOC_010599

Expression Profile

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