RNA id: TCONS_00021794


Basic Information

Item Value
RNA id TCONS_00021794
length 1794
lncRNA type intronic
GC content 0.34
exon number 3
gene id XLOC_010596
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18145417 ~ 18150006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAAAATTCATAAAGTACACCATGATAAAGACGATGACAATGACCTTTCTGTTGTTGCGGTGGAAACCATAACTCCAGAACCAGGTGAGTTTGTATTTACTTAGAAAGAAATTACTTTGAATGTGCAATCATGGTATAAGATAGACCAAGCCAACGTATTTGAAAATGAACCACATCTACCACAACTGTTTGCTGAAATGTTTtagctttaacaaaaaaaaaaaaaaaaaaacagccaataccAGTCTTGTTCTATTGTACTTTTATGGAAATATAAATACTTGATCTTGCACTAATGCCACTTTTATATACTCCATATTACACAAGGTAaatttttagttatttagcagGCACTTGTATGTACCATTATGTACCAGATGTATGTACCAGATGTATGTACCATAACTGTATTTTGCtacattgtttgtttttaaaggacAAGATGATGGGTCTTCCTCTATGGTGGAAAAAGACAAGCTGATGCTCATGGCCCAGACAATACAAACACTTAAACAGGAACGAGATTTTCTCCGCCAAACTGTCCTAAAATTGTCAAACAGAGGggcaaaaaaagtaaagaaagtcTTGGACACAAGCACTGAATGCAGCACCAGTAACACTGATGAGGAGTCCATGACTTCTTCCTCCTCTTCAGATTCACCTGATAGTGATATTCCTCGGAAGAAGAGAAAGAGTCATAAGAAGACAAAGAGGGCCAGCAGGTCAAAATCTACCAAGCACAGCACACGTGCAACAACCCCTGATGACGTACTAAGGCGGTACAACAAAGTTTTCAATGCCTATAAAAAAGAAGGGAGCATTAGTAAAGCATGTGCCAAAGTTGGGGTTGACCGTAATACTCTCGCATTAACAGCTGTTGTGGCTGAAATTCAGCTTGTTGATGCTGAGTTTTACAGAAGCATCCCTAAATTCAGAACCGAGGAGAAACTTTTTGACTTTGCCAAGAGGTGCCTGCAGTCGCTGACAACAGACTTAAAATCTGTCATTGAAAACGCCAAACAAGAGCGCAAACTTCTGCCAATAAAGTATAAGTTCAGATAGAAATATACAAATCTCTTATGTGCAGATGTTGTTTAAAGTTAAATTGTAGATTCACATCAGTAGTTATTAATTGTTACCCCATTTGTCGTTCCAACCCCTGAGACCTGAAATGACACTGAagagaataaaatgtaaaataatgcgtTTTTTGTCCACACAAAAGTATTATCATAGCTTCATAgcattacaattgaaccactgaagacaaATGTACTCTTTTGATGTTATTGGTACTGTATCTTTCTAGACTTTAAATGCCTTGCAACTCTGGCTTTCTATGGAGGGTCAGataattctaaaatatatataatataataatatataatgataataataataataaataatcagctaaaatatttttacaaataaaataaaaaagtagatttttttattttattttctgaatgaAGGACTCAGGTTTGGAATAACAGCAGGGGGAGtaattaataatttcatttttgggtaaactatcccttcaatGTGAATTGCTGTACGTTTAATGTGATATGATGTTACTTCCAACATTTATCTAAAAGTTTTAATTTActctaagattttttttgtttatggcATTATGTTTAATCTCTTTAATTTAATAGTGTCTGTAAGGTTCTATATTGCAGCCATATTTCTAAGGTTTTTCTTTATGTGTTGCACTGTtgagaataaaaatgttaataaacattgTTTACCTTTGCtgcatgttttctcttttttagtcCTCTATA

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0003002 regionalization biological_process
GO:0060026 convergent extension biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022139 lncRNA downstream 5349 18137642 ~ 18140068 (-) True XLOC_010595
TCONS_00022138 lncRNA downstream 320569 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00020756 lncRNA downstream 438653 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022137 lncRNA downstream 438841 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00021793 lncRNA downstream 463465 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022140 lncRNA upstream 323794 18472943 ~ 18501117 (-) False XLOC_010598
TCONS_00021795 lncRNA upstream 346545 18495694 ~ 18501131 (-) False XLOC_010598
TCONS_00020770 lncRNA upstream 747818 18896967 ~ 18960586 (-) False XLOC_010601
TCONS_00020774 lncRNA upstream 995998 19145147 ~ 19150743 (-) True XLOC_010604
TCONS_00021796 lncRNA upstream 1346595 19495744 ~ 19497804 (-) True XLOC_010608
TCONS_00020758 mRNA downstream 431558 17711215 ~ 17713859 (-) True XLOC_010593
TCONS_00020755 mRNA downstream 446306 17671301 ~ 17699111 (-) False XLOC_010591
TCONS_00020754 mRNA downstream 484823 17639896 ~ 17660594 (-) True XLOC_010590
TCONS_00020752 mRNA downstream 558534 17579915 ~ 17586883 (-) False XLOC_010589
TCONS_00020766 mRNA upstream 459829 18608978 ~ 18652646 (-) True XLOC_010600
TCONS_00020767 mRNA upstream 540781 18689930 ~ 18702249 (-) False XLOC_010601
TCONS_00020768 mRNA upstream 545681 18694830 ~ 18960333 (-) False XLOC_010601
TCONS_00020771 mRNA upstream 810204 18959353 ~ 18960613 (-) True XLOC_010601
TCONS_00020772 mRNA upstream 875874 19025023 ~ 19026414 (-) False XLOC_010603
TCONS_00020757 other downstream 439430 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020738 other downstream 898054 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020737 other downstream 900370 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020724 other downstream 1015951 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 1025231 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020761 other upstream 219765 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 346391 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020763 other upstream 348146 18497295 ~ 18501141 (-) False XLOC_010598
TCONS_00020764 other upstream 348405 18497554 ~ 18501117 (-) True XLOC_010598
TCONS_00020765 other upstream 431575 18580724 ~ 18583338 (-) True XLOC_010599

Expression Profile

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