RNA id: TCONS_00021795


Basic Information

Item Value
RNA id TCONS_00021795
length 1720
lncRNA type inter_gene
GC content 0.36
exon number 6
gene id XLOC_010598
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18472943 ~ 18501141 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAGAACTGTAATATGCTTTAACACACAGGTGTGCCACTTCCATGAACATAATGCTGTTTGATCTACTTGCTGTCTTagggATGTTGTCCCTCACAGGGGACTCTTCTCAGGGATGTTGTTCCTCTAGTCAAATATCTCAACAATATCACTTCATAAATATAACAAAGAACTGGACTGAGGCTCAGAGGTTTTGCCGTGAGAAGTACACTGGCCTGGTGACTGTGAAAAATGGAGATGAGACAAAGACCATAACTGatgttttaaatgatgtttacATTGGACTTTACAGACAGGAGAGATTTAGTTGGCATTGGTGTATGCCAGACACTTTCTACAATGCAAAAACACTCCAAAATTGGAAAAAGGAACAACCAGATGAAAATAATAAAGGATTTGAAACTGGAACAAATAACTCTAATTCAGAAAGACAATTTGTTTGCTATACTGCAAGAAACAACACGCAAATCCAGATTGAGAAGAGGGAATTCAAGAGAGGTGCTCAACAAAGTTGCAAAAactttacagatttaaaaaattCCTCAATCAGCTTAGAAAACTCCATTTTAATTGTTCTGAAAAACTACAACTGGGGTTTTATAACAAATGATGTGTGGATTGGACTGTTTAAAGATGACTGCTTGTGGTTGGATCAGAACAACTCTTGCTTCTGTGCCTGTAGTTTGAGTCcagaaaaacacaacaacagcagttcaaacaaatgtaaatggaTTGTAAATGAAAAAAGTATAAGGAATGAAGCTCAATGCAACGAAAATTTACCCTTCATCTGTTATGATGATCTAAAACGAACTGCTACGCCAGATCCATTGCCAACACCAACTGCTGGAGAGAATATAACCACTTCTGGAACAACAACACAGCAgcacaaaccaaaccaaaacgcAATCGAGAGGGAACATGCAAACAGTCAAACAACCCAAATACTCCCAACAGGTCAAGAACAAGCCCTTTAAAAATCAGTTCAACTTTATGATTGGTCTCATACAAAATCTTGTGCCTCCTACTCATGTATGTTGCCATTTTTGCTTGtcctaaaataaaatttaacagacgcccttttcttttttctttatttccatatttaaaaccaaacacaaacacagtttttGTAAACGTCTCATCAACGGAAAGCAAAATAACCTccaataaattgaataaaaaccCAGTCTTTCACAAtgcataaaacaatgaaaaattgtCTCTCTTTCATCACAAAAAGGACATTTATCATGCACAGTTGGATtcagtattgaaataaaagtaTTGACTGCAATAATACACTTTAACATCCGGCACTGAAGATCTCCAACATTTTTAGTCAACGGTGGCTTGTAAACTGAACTCCAAACAGGCATAACATCACTATCAACATTTAAATGCTCTCTCCATGGTGTATCGACACATTGTAATTTTTCTTGGTTTGTAACTTTTATACAAATCTTATACAAAATCTTTCCTCccaatgaattaaaaacaatgtCTTTTGAAATCTTTAAACTCTCCATTCCTGAAGGATTTTGTTGTATGACCAAACTTGGAAACGAATCCATTATATTTGGCACTGTTTGTAATGATAAAAAGTTCCAGTCTTTTTGACTCAGTGTTTCTCTTAGTTTTTTTGAGCAATAAATGAACTTTTCTTGTTGATCTCCTATTTAGTCTTTGAGCGACTGTATCGGCATTGTCTAAATTTTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020759 lncRNA downstream 345688 18145893 ~ 18150006 (-) False XLOC_010596
TCONS_00020760 lncRNA downstream 345691 18146258 ~ 18150003 (-) True XLOC_010596
TCONS_00021794 lncRNA downstream 346545 18145417 ~ 18149149 (-) False XLOC_010596
TCONS_00022139 lncRNA downstream 355626 18137642 ~ 18140068 (-) True XLOC_010595
TCONS_00022138 lncRNA downstream 670846 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00020770 lncRNA upstream 395836 18896967 ~ 18960586 (-) False XLOC_010601
TCONS_00020774 lncRNA upstream 644016 19145147 ~ 19150743 (-) True XLOC_010604
TCONS_00021796 lncRNA upstream 994613 19495744 ~ 19497804 (-) True XLOC_010608
TCONS_00020782 lncRNA upstream 1115957 19617088 ~ 19618074 (-) False XLOC_010610
TCONS_00020783 lncRNA upstream 1115957 19617088 ~ 19618599 (-) True XLOC_010610
TCONS_00020758 mRNA downstream 781835 17711215 ~ 17713859 (-) True XLOC_010593
TCONS_00020755 mRNA downstream 796583 17671301 ~ 17699111 (-) False XLOC_010591
TCONS_00020754 mRNA downstream 835100 17639896 ~ 17660594 (-) True XLOC_010590
TCONS_00020752 mRNA downstream 908811 17579915 ~ 17586883 (-) False XLOC_010589
TCONS_00020766 mRNA upstream 107847 18608978 ~ 18652646 (-) True XLOC_010600
TCONS_00020767 mRNA upstream 188799 18689930 ~ 18702249 (-) False XLOC_010601
TCONS_00020768 mRNA upstream 193699 18694830 ~ 18960333 (-) False XLOC_010601
TCONS_00020771 mRNA upstream 458222 18959353 ~ 18960613 (-) True XLOC_010601
TCONS_00020772 mRNA upstream 523892 19025023 ~ 19026414 (-) False XLOC_010603
TCONS_00020761 other downstream 123154 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020757 other downstream 789707 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020738 other downstream 1248331 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020737 other downstream 1250647 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020724 other downstream 1366228 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020765 other upstream 79593 18580724 ~ 18583338 (-) True XLOC_010599
TCONS_00020769 other upstream 363139 18864270 ~ 18864386 (-) True XLOC_010602
TCONS_00020777 other upstream 689383 19190514 ~ 19190631 (-) True XLOC_010606
TCONS_00020779 other upstream 921164 19422295 ~ 19424133 (-) True XLOC_010607
TCONS_00020792 other upstream 1375139 19876270 ~ 19882947 (-) False XLOC_010616

Expression Profile

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