RNA id: TCONS_00020774


Basic Information

Item Value
RNA id TCONS_00020774
length 803
lncRNA type antisense
GC content 0.42
exon number 3
gene id XLOC_010604
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19145147 ~ 19150743 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTTGTTTTATGTCTTGGGCTCAAGTCTGTGTGAGAGCTCAAAGAGAGTCTGCTGATTGTCGATGAGGTGCAGGTAATTGATGTACGTTCTCACTTCCATGCTGTCCTTCTGGAATAACAAGTTTcctgatgacaaaaaaaaataataataataaggttgccacagaggaatgaacccccaactattccagcagatgttttatgcagcagatgcctttccagtcccaacacattactgggaaacacccatatactcatTTCCACACACAAAGCAGAGGTAGGAAAGGGATCTTGGGAGACTTCATCTTCCTGAAGGCATCTCTGTAGGCTTTGTGGTTTAACGAAGGGTCCTACGGGTCATCAGAAAAGCATTCATGTGTATACATATTTAAGTGTTTGTATTACTTTTCACCGAAAGCATCTGGTGCATCTCAGACTCTTCCCTCTGTACCGCCACCTGCTATTTCCTCCCTGGAGGCCAAAGGCTTTGATATGATTACGCTTTCATATATTACATCCTAATGAGCCGTAAACAGCACAAAATACTACAGCAGGAGGTGAACTAGCAGGAGGCAACTTAGGAGTGTGATGAGACAATCACTTACCGTCAGGCTCTCCAGCTCGGAGAACAACTTCCTGAACTTCCCAGGGACTTTCTGAAATGAGGACAGTTTGAAAATATCAGAAGAATTGAAGTTAACGTGTCTGTTAAGCAGAGCTTGCAGTACCTTAAATGCATTAAGTTTAAGAGCAATTCATGATAAATACCACTGCGCATATAAAGCAATGTATTTCTGTGCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000138939

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020770 lncRNA downstream 184561 18896967 ~ 18960586 (-) False XLOC_010601
TCONS_00021795 lncRNA downstream 644016 18495694 ~ 18501131 (-) False XLOC_010598
TCONS_00022140 lncRNA downstream 644030 18472943 ~ 18501117 (-) False XLOC_010598
TCONS_00020759 lncRNA downstream 995141 18145893 ~ 18150006 (-) False XLOC_010596
TCONS_00020760 lncRNA downstream 995144 18146258 ~ 18150003 (-) True XLOC_010596
TCONS_00021796 lncRNA upstream 345001 19495744 ~ 19497804 (-) True XLOC_010608
TCONS_00020782 lncRNA upstream 466345 19617088 ~ 19618074 (-) False XLOC_010610
TCONS_00020783 lncRNA upstream 466345 19617088 ~ 19618599 (-) True XLOC_010610
TCONS_00020784 lncRNA upstream 475783 19626526 ~ 19627832 (-) True XLOC_010611
TCONS_00020785 lncRNA upstream 480671 19631414 ~ 19633025 (-) False XLOC_010612
TCONS_00020773 mRNA downstream 118414 19025241 ~ 19026733 (-) True XLOC_010603
TCONS_00020772 mRNA downstream 118733 19025023 ~ 19026414 (-) False XLOC_010603
TCONS_00020771 mRNA downstream 184534 18959353 ~ 18960613 (-) True XLOC_010601
TCONS_00020768 mRNA downstream 184814 18694830 ~ 18960333 (-) False XLOC_010601
TCONS_00020767 mRNA downstream 442898 18689930 ~ 18702249 (-) False XLOC_010601
TCONS_00020775 mRNA upstream 30420 19181163 ~ 19254323 (-) False XLOC_010605
TCONS_00020776 mRNA upstream 31969 19182712 ~ 19349318 (-) False XLOC_010605
TCONS_00020778 mRNA upstream 155779 19306522 ~ 19373310 (-) True XLOC_010605
TCONS_00020780 mRNA upstream 386295 19537038 ~ 19568795 (-) False XLOC_010609
TCONS_00020781 mRNA upstream 389774 19540517 ~ 19568388 (-) True XLOC_010609
TCONS_00020769 other downstream 280761 18864270 ~ 18864386 (-) True XLOC_010602
TCONS_00020765 other downstream 561809 18580724 ~ 18583338 (-) True XLOC_010599
TCONS_00020762 other downstream 644006 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020777 other upstream 39771 19190514 ~ 19190631 (-) True XLOC_010606
TCONS_00020779 other upstream 271552 19422295 ~ 19424133 (-) True XLOC_010607
TCONS_00020792 other upstream 725527 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020793 other upstream 728101 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020802 other upstream 1242950 20393693 ~ 20393809 (-) True XLOC_010623