RNA id: TCONS_00020779


Basic Information

Item Value
RNA id TCONS_00020779
length 537
RNA type processed_transcript
GC content 0.39
exon number 5
gene id XLOC_010607
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19422295 ~ 19424133 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGATGGCTTCACGTTTATTTTAAGAAAACTGACTCAATTATGTGGATTTGATTGAGATGTTTGCATTTGAATCTCGACAAGGGCAGTGATCAGAAGACATTCTGAAGGAGTACAGTGAGCATGCTAAGAGCCTAGTTTGATCAGGCAACATTTAAGCGTGGTGGACAAACAACAGTGAACTTGTTGattaatgaagaacatttttacagtattttcccACAAAAGAGGAGCAGTTTATGGgcAAAATTACTAATCTCTACACCTTTGTTGCATCAGACCTCACATTAAATCAGGGAGGAGATGAGATGTCGTCCTCTGTTGCTGGTGTATTTGTATGAAAAAAGAGGAAGAACTCATCCAGAAGTGCAATtgtgggaTTGCACAGAGAAATGCTGTCTGCCATGAGGGATAACCAACCATGAGAACTTTTGCATTGTCTTGGAGGATAAGTATGTCATGGCTGGCTTGGAAAATCTAGAATTTCAGAACTGGATTTATACAAGTAAGCCCCAAATTAAAATCACCCAAAAACAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135879

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020774 lncRNA downstream 271552 19145147 ~ 19150743 (-) True XLOC_010604
TCONS_00020770 lncRNA downstream 461709 18896967 ~ 18960586 (-) False XLOC_010601
TCONS_00021795 lncRNA downstream 921164 18495694 ~ 18501131 (-) False XLOC_010598
TCONS_00022140 lncRNA downstream 921178 18472943 ~ 18501117 (-) False XLOC_010598
TCONS_00020760 lncRNA downstream 1272292 18146258 ~ 18150003 (-) True XLOC_010596
TCONS_00021796 lncRNA upstream 71611 19495744 ~ 19497804 (-) True XLOC_010608
TCONS_00020782 lncRNA upstream 192955 19617088 ~ 19618074 (-) False XLOC_010610
TCONS_00020783 lncRNA upstream 192955 19617088 ~ 19618599 (-) True XLOC_010610
TCONS_00020784 lncRNA upstream 202393 19626526 ~ 19627832 (-) True XLOC_010611
TCONS_00020785 lncRNA upstream 207281 19631414 ~ 19633025 (-) False XLOC_010612
TCONS_00020778 mRNA downstream 48985 19306522 ~ 19373310 (-) True XLOC_010605
TCONS_00020776 mRNA downstream 72977 19182712 ~ 19349318 (-) False XLOC_010605
TCONS_00020775 mRNA downstream 167972 19181163 ~ 19254323 (-) False XLOC_010605
TCONS_00020773 mRNA downstream 395562 19025241 ~ 19026733 (-) True XLOC_010603
TCONS_00020772 mRNA downstream 395881 19025023 ~ 19026414 (-) False XLOC_010603
TCONS_00020780 mRNA upstream 112905 19537038 ~ 19568795 (-) False XLOC_010609
TCONS_00020781 mRNA upstream 116384 19540517 ~ 19568388 (-) True XLOC_010609
TCONS_00020788 mRNA upstream 416013 19840146 ~ 20006270 (-) False XLOC_010616
TCONS_00020789 mRNA upstream 418401 19842534 ~ 19890366 (-) False XLOC_010616
TCONS_00020791 mRNA upstream 440474 19864607 ~ 19890303 (-) False XLOC_010616
TCONS_00020777 other downstream 231664 19190514 ~ 19190631 (-) True XLOC_010606
TCONS_00020769 other downstream 557909 18864270 ~ 18864386 (-) True XLOC_010602
TCONS_00020765 other downstream 838957 18580724 ~ 18583338 (-) True XLOC_010599
TCONS_00020762 other downstream 921154 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020792 other upstream 452137 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020793 other upstream 454711 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020802 other upstream 969560 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020803 other upstream 978087 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020809 other upstream 1470979 20895112 ~ 20895175 (-) True XLOC_010626