RNA id: TCONS_00020782


Basic Information

Item Value
RNA id TCONS_00020782
length 606
lncRNA type lincRNA
GC content 0.37
exon number 2
gene id XLOC_010610
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19617088 ~ 19618599 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctatttctcacgggttaatgagcttattgtatagtgtatcattaattgtacattttatttttggtgttcaggtgtagggaatgatttgtatacaaatttatttgaaccccatacagattggtatggttgtaccatagatttagattattaaatgttaagtcttattttactcttattatatttatcttttttgcagctacagcaattgatgttgaaaaactgatgctactaatctctcctcacttgattattcaaagtaatgttgatgtctttctcattttgattagattttgaaatgtcaagttgttcacagatttgttgtgaggagttttatgtacaacctctttttcttcctCTAGtagcgatgcagtggcacagtagtagtgctgtcgcctcacagcaagaaggttgctggttcgagcctcggctgggtcagttggctgaatacaatggcataatgattctgcttgctcacaggagctcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagcacagatgtggagggatctgcaactaaactaactggaggaaaggaacctttaggtaaaaacacc

Function

GO:

id name namespace
GO:0021535 cell migration in hindbrain biological_process
GO:0003002 regionalization biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194005

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021796 lncRNA downstream 119284 19495744 ~ 19497804 (-) True XLOC_010608
TCONS_00020774 lncRNA downstream 466345 19145147 ~ 19150743 (-) True XLOC_010604
TCONS_00020770 lncRNA downstream 656502 18896967 ~ 18960586 (-) False XLOC_010601
TCONS_00021795 lncRNA downstream 1115957 18495694 ~ 18501131 (-) False XLOC_010598
TCONS_00022140 lncRNA downstream 1115971 18472943 ~ 18501117 (-) False XLOC_010598
TCONS_00020784 lncRNA upstream 8452 19626526 ~ 19627832 (-) True XLOC_010611
TCONS_00020785 lncRNA upstream 13340 19631414 ~ 19633025 (-) False XLOC_010612
TCONS_00020786 lncRNA upstream 13721 19631795 ~ 19634470 (-) True XLOC_010612
TCONS_00021797 lncRNA upstream 189454 19807528 ~ 19821312 (-) True XLOC_010613
TCONS_00022141 lncRNA upstream 193560 19811634 ~ 19813669 (-) False XLOC_010614
TCONS_00020780 mRNA downstream 48293 19537038 ~ 19568795 (-) False XLOC_010609
TCONS_00020781 mRNA downstream 48700 19540517 ~ 19568388 (-) True XLOC_010609
TCONS_00020778 mRNA downstream 243778 19306522 ~ 19373310 (-) True XLOC_010605
TCONS_00020776 mRNA downstream 267770 19182712 ~ 19349318 (-) False XLOC_010605
TCONS_00020775 mRNA downstream 362765 19181163 ~ 19254323 (-) False XLOC_010605
TCONS_00020788 mRNA upstream 222072 19840146 ~ 20006270 (-) False XLOC_010616
TCONS_00020789 mRNA upstream 224460 19842534 ~ 19890366 (-) False XLOC_010616
TCONS_00020791 mRNA upstream 246533 19864607 ~ 19890303 (-) False XLOC_010616
TCONS_00020794 mRNA upstream 394116 20012190 ~ 20038263 (-) False XLOC_010617
TCONS_00020795 mRNA upstream 395753 20013827 ~ 20038263 (-) True XLOC_010617
TCONS_00020779 other downstream 192955 19422295 ~ 19424133 (-) True XLOC_010607
TCONS_00020777 other downstream 426457 19190514 ~ 19190631 (-) True XLOC_010606
TCONS_00020769 other downstream 752702 18864270 ~ 18864386 (-) True XLOC_010602
TCONS_00020765 other downstream 1033750 18580724 ~ 18583338 (-) True XLOC_010599
TCONS_00020764 other downstream 1115971 18497554 ~ 18501117 (-) True XLOC_010598
TCONS_00020792 other upstream 258196 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020793 other upstream 260770 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020802 other upstream 775619 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020803 other upstream 784146 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020809 other upstream 1277038 20895112 ~ 20895175 (-) True XLOC_010626

Expression Profile

//