RNA id: TCONS_00020785


Basic Information

Item Value
RNA id TCONS_00020785
length 710
lncRNA type lincRNA
GC content 0.42
exon number 4
gene id XLOC_010612
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19631414 ~ 19634470 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAAGTTAGGATTATTCTGCAGGTCTTAACCAAATAAAGTCTCATATCTTTAATTTATATCAGGTATGTTTTACCTGGCGAATAAGAAGTTATGGCCAATATGATTGGATTGCTTAGGCTCATTGTAggaggaaaagaaaacaaactacagGATGATTTTCATTGAGGTTATCTCAAACTgcCATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTGTTATTACAGGTCAGAGTATGGTTAATTTTGGCACAATGCTCAAAGAGCCTTTTTGTTACTGGTATATATGTTAACTCAACAGTGATTGTTCTCTATTTCAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGtccctttatttatcaggggttgccacagcagaaggaactgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaagcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGaggcctctagagatcgtaacctgtga

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0006310 DNA recombination biological_process
GO:0006950 response to stress biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0007017 microtubule-based process biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0033554 cellular response to stress biological_process
GO:0007098 centrosome cycle biological_process
GO:0051052 regulation of DNA metabolic process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0098687 chromosomal region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0003677 DNA binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0140097 catalytic activity, acting on DNA molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194428

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020784 lncRNA downstream 3582 19626526 ~ 19627832 (-) True XLOC_010611
TCONS_00020783 lncRNA downstream 12815 19617088 ~ 19618599 (-) True XLOC_010610
TCONS_00020782 lncRNA downstream 13340 19617088 ~ 19618074 (-) False XLOC_010610
TCONS_00021796 lncRNA downstream 133610 19495744 ~ 19497804 (-) True XLOC_010608
TCONS_00020774 lncRNA downstream 480671 19145147 ~ 19150743 (-) True XLOC_010604
TCONS_00021797 lncRNA upstream 174503 19807528 ~ 19821312 (-) True XLOC_010613
TCONS_00022141 lncRNA upstream 178609 19811634 ~ 19813669 (-) False XLOC_010614
TCONS_00022142 lncRNA upstream 178609 19811634 ~ 19813802 (-) True XLOC_010614
TCONS_00020787 lncRNA upstream 195351 19828376 ~ 19834469 (-) True XLOC_010615
TCONS_00020790 lncRNA upstream 209509 19842534 ~ 19890366 (-) False XLOC_010616
TCONS_00020780 mRNA downstream 62619 19537038 ~ 19568795 (-) False XLOC_010609
TCONS_00020781 mRNA downstream 63026 19540517 ~ 19568388 (-) True XLOC_010609
TCONS_00020778 mRNA downstream 258104 19306522 ~ 19373310 (-) True XLOC_010605
TCONS_00020776 mRNA downstream 282096 19182712 ~ 19349318 (-) False XLOC_010605
TCONS_00020775 mRNA downstream 377091 19181163 ~ 19254323 (-) False XLOC_010605
TCONS_00020788 mRNA upstream 207121 19840146 ~ 20006270 (-) False XLOC_010616
TCONS_00020789 mRNA upstream 209509 19842534 ~ 19890366 (-) False XLOC_010616
TCONS_00020791 mRNA upstream 231582 19864607 ~ 19890303 (-) False XLOC_010616
TCONS_00020794 mRNA upstream 379165 20012190 ~ 20038263 (-) False XLOC_010617
TCONS_00020795 mRNA upstream 380802 20013827 ~ 20038263 (-) True XLOC_010617
TCONS_00020779 other downstream 207281 19422295 ~ 19424133 (-) True XLOC_010607
TCONS_00020777 other downstream 440783 19190514 ~ 19190631 (-) True XLOC_010606
TCONS_00020769 other downstream 767028 18864270 ~ 18864386 (-) True XLOC_010602
TCONS_00020765 other downstream 1048076 18580724 ~ 18583338 (-) True XLOC_010599
TCONS_00020764 other downstream 1130297 18497554 ~ 18501117 (-) True XLOC_010598
TCONS_00020792 other upstream 243245 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020793 other upstream 245819 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020802 other upstream 760668 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020803 other upstream 769195 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020809 other upstream 1262087 20895112 ~ 20895175 (-) True XLOC_010626

Expression Profile

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