RNA id: TCONS_00020793


Basic Information

Item Value
RNA id TCONS_00020793
length 287
RNA type processed_transcript
GC content 0.49
exon number 2
gene id XLOC_010616
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19840146 ~ 20006270 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGATCTTACGGGCCATCAGGACTGGGCAGGAGAGGTCACCCATTTCCCTTTAAACCTCTAAACAGAGCAGGGCACTCATTCTGGGGTTATGtggaCATTAAGCCAGAGGTACCACTGGCTCTTGATCCAGGCTCTCCACTGGATCTTCGTACAGACATTAGGATGCAGGGCTCTGCTTCAGAAGTCACTGTCTGGGAAAGACAACTTCAACAAGAACTGCTCCTCATTCAGAAACAGCAGCAGATTCAGAAGCAGTTACTCATCACTGAGTTCCAGAAGCAGCAC

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0001525 angiogenesis biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0001944 vasculature development biological_process
GO:0001945 lymph vessel development biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004407 histone deacetylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040109-7 Predicted to enable NAD-dependent histone deacetylase activity (H3-K14 specific). Acts upstream of or within angiogenesis; lymph vessel development; and primitive erythrocyte differentiation. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Orthologous to human HDAC9 (histone deacetylase 9).

Ensembl:

ensembl_id ENSDART00000139027

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020787 lncRNA downstream 44375 19828376 ~ 19834469 (-) True XLOC_010615
TCONS_00021797 lncRNA downstream 57532 19807528 ~ 19821312 (-) True XLOC_010613
TCONS_00022142 lncRNA downstream 65042 19811634 ~ 19813802 (-) True XLOC_010614
TCONS_00022141 lncRNA downstream 65175 19811634 ~ 19813669 (-) False XLOC_010614
TCONS_00020786 lncRNA downstream 244374 19631795 ~ 19634470 (-) True XLOC_010612
TCONS_00020796 lncRNA upstream 71490 20041857 ~ 20043085 (-) False XLOC_010618
TCONS_00021798 lncRNA upstream 71499 20041866 ~ 20043276 (-) True XLOC_010618
TCONS_00022143 lncRNA upstream 179210 20149577 ~ 20152725 (-) True XLOC_010619
TCONS_00022144 lncRNA upstream 339003 20309370 ~ 20312169 (-) False XLOC_010621
TCONS_00020798 lncRNA upstream 339003 20309370 ~ 20312666 (-) True XLOC_010621
TCONS_00020780 mRNA downstream 310049 19537038 ~ 19568795 (-) False XLOC_010609
TCONS_00020781 mRNA downstream 310456 19540517 ~ 19568388 (-) True XLOC_010609
TCONS_00020778 mRNA downstream 505534 19306522 ~ 19373310 (-) True XLOC_010605
TCONS_00020776 mRNA downstream 529526 19182712 ~ 19349318 (-) False XLOC_010605
TCONS_00020775 mRNA downstream 624521 19181163 ~ 19254323 (-) False XLOC_010605
TCONS_00020794 mRNA upstream 41823 20012190 ~ 20038263 (-) False XLOC_010617
TCONS_00020795 mRNA upstream 43460 20013827 ~ 20038263 (-) True XLOC_010617
TCONS_00020797 mRNA upstream 295132 20265499 ~ 20294236 (-) True XLOC_010620
TCONS_00020799 mRNA upstream 348033 20318400 ~ 20435475 (-) False XLOC_010622
TCONS_00020800 mRNA upstream 348033 20318400 ~ 20492799 (-) False XLOC_010622
TCONS_00020779 other downstream 454711 19422295 ~ 19424133 (-) True XLOC_010607
TCONS_00020777 other downstream 688213 19190514 ~ 19190631 (-) True XLOC_010606
TCONS_00020769 other downstream 1014458 18864270 ~ 18864386 (-) True XLOC_010602
TCONS_00020765 other downstream 1295506 18580724 ~ 18583338 (-) True XLOC_010599
TCONS_00020764 other downstream 1377727 18497554 ~ 18501117 (-) True XLOC_010598
TCONS_00020802 other upstream 423326 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020803 other upstream 431853 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020809 other upstream 924745 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020827 other upstream 1480788 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020829 other upstream 1485587 21455954 ~ 21463718 (-) False XLOC_010634

Expression Profile

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