RNA id: TCONS_00021798


Basic Information

Item Value
RNA id TCONS_00021798
length 1297
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_010618
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20041857 ~ 20043276 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGCCTCTACAGATTCAGTAagtgtaaatacatgtaaatacatgACTTACTGCAATGACTAGCGTTActaagtattttacagtaattcTTCAATACTACAGACTGTAAACAGTTGGTTTTCATTTAATCGTGTCTGTCCGGTGTCTTTTAGACGGTTGTACAACAGTTATGTTCGCCATCTGAATCAGAAATGCGGTGTGAGGTGGCGTGCCAGACTGATGTATACACAACTGATGTAGCATGCCAAACCGACGCGGTTATGCCCATCAAACATACCAGCACACAATGCAGTTGGAAACCAAAACAAAGAAGCAAGAGTAAGAATTAAATCCATTTCTGTTTGCTGGTCAATGTTGCATTGGCATTTTTAGACTAGCATGTTTTCTTTGTTCAGGCATCCAGGTTAAACAGCATAAGAAGGATGTTAGCTGTAACGTTAGCACAGTCATGTTGAACACATCGTTCGAAGAACTTCCACTTGCCGTTTCAACCCCTGTAAAAAGGTCAAGAACTACGGCTATAGATGACATTACGTTCAACCCAGATGATACCAACCACACCATCTATAATGAGAGTACTGAAATAGAAACACCACATTACAAAATGAGGAAATTTATAGTTTACGAAGAAAACATCATTGTGCTCTTCAGGCAGTGTCCTATCTGCACCAAAAGATGTGTTATACACAGTAGGACTGTCGGATCTCTTTAATTTGTGGATCAGGTCTGCACACACTGTGAGCATCGTAACACTTGGACCAGTCAGCCGTATGTTGCAGACATACCAGCAGGAAATATCCAGCTGGCCGCAGCTGTAGTTTTTAGTGGAGCGTCCTTCTTGCAAGTGGATAAGGCaaggctatttttatttatatcccTCTGTGACCCTTGTTTTCTGCTGCAGTTTAAGTAATAGTTAATTTTCCATGTGTCCGCAGTTGTTTCAGTTATATAACATTGCAGGGATTAGTCACACGACCTACCTAAAACATCAGCGGAATTTACTTTTTCCAACAATCAATTGGTTGTGGAATATGGAACAAAGTACAGCTGTTCAACATGCAATCACGAATGGAGACACCATCTTTGGCGGGGACATGCGGGCCGACTCTCCAGGTAAGTTTATTAAAGTAATACAACAATATAAAAGCAGTATTATGTAAATTAGttaacaaatgttatttaatcatACTTTTTTAGGACACAGTGCAAAATATGGTACCTATTCTGTGATGGACCTGAAAGCAAACCGAATAGTGGACATTCAGCTTATCCAGGTATTTCAGTGTACTACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020790 lncRNA downstream 151500 19842534 ~ 19890366 (-) False XLOC_010616
TCONS_00020787 lncRNA downstream 207397 19828376 ~ 19834469 (-) True XLOC_010615
TCONS_00021797 lncRNA downstream 220554 19807528 ~ 19821312 (-) True XLOC_010613
TCONS_00022143 lncRNA upstream 106301 20149577 ~ 20152725 (-) True XLOC_010619
TCONS_00022144 lncRNA upstream 266094 20309370 ~ 20312169 (-) False XLOC_010621
TCONS_00020798 lncRNA upstream 266094 20309370 ~ 20312666 (-) True XLOC_010621
TCONS_00020801 lncRNA upstream 284762 20328038 ~ 20371666 (-) False XLOC_010622
TCONS_00022145 lncRNA upstream 880206 20923482 ~ 20927125 (-) True XLOC_010627
TCONS_00020794 mRNA downstream 3603 20012190 ~ 20038263 (-) False XLOC_010617
TCONS_00020795 mRNA downstream 3603 20013827 ~ 20038263 (-) True XLOC_010617
TCONS_00020788 mRNA downstream 35596 19840146 ~ 20006270 (-) False XLOC_010616
TCONS_00020797 mRNA upstream 222223 20265499 ~ 20294236 (-) True XLOC_010620
TCONS_00020799 mRNA upstream 275124 20318400 ~ 20435475 (-) False XLOC_010622
TCONS_00020800 mRNA upstream 275124 20318400 ~ 20492799 (-) False XLOC_010622
TCONS_00020804 mRNA upstream 485924 20529200 ~ 20707742 (-) True XLOC_010624
TCONS_00020805 mRNA upstream 762046 20805322 ~ 20855730 (-) False XLOC_010625
TCONS_00020793 other downstream 71499 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020792 other downstream 158919 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020779 other downstream 617733 19422295 ~ 19424133 (-) True XLOC_010607
TCONS_00020777 other downstream 851235 19190514 ~ 19190631 (-) True XLOC_010606
TCONS_00020769 other downstream 1177480 18864270 ~ 18864386 (-) True XLOC_010602
TCONS_00020802 other upstream 350417 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020803 other upstream 358944 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020809 other upstream 851836 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020827 other upstream 1407879 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020829 other upstream 1412678 21455954 ~ 21463718 (-) False XLOC_010634

Expression Profile

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