RNA id: TCONS_00020805


Basic Information

Item Value
RNA id TCONS_00020805
length 3686
RNA type mRNA
GC content 0.45
exon number 16
gene id XLOC_010625
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20805322 ~ 20935507 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACAGCTGCTGATAGACAGATGGCTTTATTCCTGGAGGGGACAGCAGCAAGCAGCGCCATGGAAACGTCTAATTTCGCCCATGTCATCTTCCAGAATGTGGGGAAAAGTTACCTCCCTCACGGAGCATTAGAGTGCCATTACACCCTCACGCAGTTCATTAAACCACATCCCAAGGACTGGGTCGGCATATTCAAGGTTGGATGGAGCACCGCTCGTGACTACTACACATTCCTGTGGTCACCTCTTCCTGACAACTACACCGAGGGAACCGCAATCAACAGATCTGTGGTCTTCCAAGGTTACTACGTCCCTAATGATGATGGTGAGTTCTACCAGTTCTGCTATGTGACACATAAGGGAGAGATCCGTGGGGCCAGCACTCCATTCCAGTTCCGCGCCAACAGCCCCACAGAGGAGGAACTGCTGACAATGGAGGATGAAGGTGGATCCGATATTCTGGTGGTCACCACCAAAGCAAGTTACCTGGAGcaaaAGATGGAGCAAATTCAACAGGAAAAGAAAGAGCTTTTGGAAAACCTGGACCTACTTCAGAAGGAAAGAGATGAGCTGATCGATGAGAAGAACAGACTAGAGAAAGAATACGAGCAGGAGCGAGAGAGCAGTGCTCAGCTCAGGAAGGATGTGCAGGAGTTACAGCTGTCTGCACAGAGCTTGCAGGAGGAGAGAGAGGAGGTGAAAAGGAGAATGGAGGAGAGCACGGCTCGACTCTTGCAATTGGAGGAAGATCTGATTGGAGTCACACAGAAAGGCCTACAGAAGGAGACTGAACTAgactgCCTGAAGGATCGAGTGAAGAAGTTAAACTTGGAGAAAGAGGCTCTTGAGGGTCAGCTGAAGAATGAGAAAGATGAGAAGGAGCTCTATAAGATTCACTTGAAGAACCGGGAGCTTGAGAACACTAAACTGAGTGCCGAGCTACAAATGCTGAAGTCTGTAGATGTGAATAAGGAGAACACCATTGCTCAGCTGAAGGATGAGCTCGCCAGAGTCAAATCCTGCCTGGCAGAAAAGGAAAAACAGCACCGGCAGCTATTGGCCAATAGTTCACCATCGGGGGAAAGCAAGGCTCTTAGGGAGCAGCTCAGGCAAAAAGAGGAGCAGTTGCAGGCAACCCAGCAGCAGGCAAACATGCTAAAAGCGGAACTGCGTGACTCCTCTAACGCCCGTGACAGAAGCATGGCAGAGCTGTACCGTATACGCGTAGAGGCAGAGACATTGAAGAAGGGACAGGCGGATGCCAGGGCTGAGTGCAGCCGTCTGGAACAGCAGTTGGAGGAGATGAAAAGCTCAACCCAGCAGGAGGCGCAGTGTAAGGAGTCTGATGTATTAGCCGTTGCTGAACTGCAGAGAGAAGTTGAAGATTTAAGGCTCAGGCTGCAGATGGCTGCTGAACACTATAAAGACAAGTATAAGGAATGCCAGAAGCTCCAGAAACAAGTGGTCAAGTTCAATGAACAGCAAGGAGTGAAGAGAAGTCCTGGGTCTGATGCAGCAGCGGGGCCTTTATCTGCAAGTCCAGAGGCATCTGCACCTGGAAGCCCAAGTACTTCAGATGCAGTTCTAGATGCCATCATTCATGGCAGGCTGAAATCATCAAGCAAAGAGCTGGACAAAAATGACAAATACAGAAAATGCAAACAGATGCTTAATGAGGAACGAGAGCGTTGCAGCATGATAACTGATGAGCTCACGAAGATGGAGGTGAAGCTGAGGGAGCAGATGAAAACCAATGAGAGCCTGCGAATGCAGCTGGCTGCTGAGGAGGATCGTTATAAGCAGTTGCAGAAGAGTGTCAACAGGGAAGAAGAACAGAAAGATAGCAATCTGGACGTTCAGTCAGTTTTCCTGCAGTACCCGATGCCGTACGCTCAAGATGACCCATCTCCTTTGCTGGTGCCCCAGCGTCCCACTGATCTGTTGTTCGGGAACCCCTACTCTTCTACTGACTCCAGGGATGGAGCCGACGGAGAGTTCTCTGATGACCAGATGCCCCGATTGCCCCCAGTTGGGCCTCCATCCTGGGATAGCAATGTCGTGTGCATACAGCCTGCCCGTAACCTCAGTCGCCCTGATGGACTGGAGGAACCAGAAGAGCCGCAGAGCACTCAAAACGATGATGAGCCTGCAGCCCCTGAACCTGCAGAATTTCTGAATGATGGACAGATGCCATTCTGCTTCGAACCCACTGGCGAGCAGAAGCGTTGTCCCCTGTGTGAAGTGATCTTCCCTCCTCACTATGACCAGTCCAAGTTCGAGGAGCACGTGGAGAGCCATTGGAAGATCTGTCCCATGTGCAGCGAACAGTTCCCTCTGGACTGTGACCAGCAGCTCTTCGAGAAGCACGTCCTCACCCACTTCGACAGTAACGTGCTCAACTTCTAAGTCAGAAAACGAAAGTCcacttcgcgctcttcttatttgTGTTGCAGTTAACAGCATGTTTAGCTTCGAGCATTCATCTATAGACAACTGATTCTTCATTTAACACGATCAAGGTGAAGTTTGGATACAGGTAATCAACTCCAAATGACCGAATGATGGAAACTAGGTGCGTTTTAAGGTCTTTATTTATGGTTCTTATTAGTTGGGGTTACTTCTGTCAATGGGAGTGTAATGTAGCTCACTTTAACGCCGCTCTTATCAAAATTAGCAAGGCAAGTGGTTACGaataatttacaaatacaaatagtttgtcatatataagttgaagtcaggTTTGGCCTACTATACTGTGTGCAGGCAGAGAACAGCGGTTTCTGTCAGGGCATGTATGAGGGTTATTCtatattatgaaattattttagAATAAGCTTTTAAAGATGAATAATCAAGTTTTTTTTGAGTTAGTGTATTTTATTCTTTCTCTATTTAAATCACTTATTTTAATTGAGTTGCATGCTCATGTTTCCTGTGCACTGAAATCATAAAcctcttgtttttgtttgtttttttggttgcTCCATTACTTTTAGTTAAATGCATTTGGTCTCCTACTGTGTGAGTGTGTCTTATATACAAGATCTAAACCAATAAAGATTTCACTGAAGCAATATTTACGCATCCTGGTcgtgttataataatatttacaatttacttTGACTTAAAAATGTCATGGTAAATTCATTGTGAAGATTATTCGAAAGTAATGCTAACAAACACATTATTATTGATACaattaaaactatattattattattaatattactgggAAAATCTTAAAGGGAGATTTCATTCTATTTGTTGTTGACTATTTCAAAACTTGTGGATTGAAGGACAGTGGcaaacatttcaaataaacaattataattaataactgcATATTTTAATGCCAttaaataattcttatttttttttaaatgcctcaCATTTTTGggtttataaattattaataggCCTGCATGGTgtctcagtgggtagcactgtcgcctcacagcaagaaggttgctggttcgagccccggctgggtcagttggcatttctgtgtggactttgtgGGGGAAATccgagcaccaggaggaaacccacacaaacacggggagaacatgcaaactctacacagaaatgccaactgacccagctgtgacGTGAACCAGTGACtgttttttgctgtgaggcgacagtgcttatcACTAAGCCACCATTTTCATTTTCACCATTTTCACC

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2872 Predicted to enable metal ion binding activity. Predicted to act upstream of or within apoptotic process. Is expressed in mesenchyme pectoral fin. Orthologous to human TAX1BP1 (Tax1 binding protein 1).

Ensembl:

ensembl_id ENSDART00000188905

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020801 lncRNA downstream 433656 20328038 ~ 20371666 (-) False XLOC_010622
TCONS_00020798 lncRNA downstream 492656 20309370 ~ 20312666 (-) True XLOC_010621
TCONS_00022144 lncRNA downstream 493153 20309370 ~ 20312169 (-) False XLOC_010621
TCONS_00022143 lncRNA downstream 652597 20149577 ~ 20152725 (-) True XLOC_010619
TCONS_00021798 lncRNA downstream 762046 20041866 ~ 20043276 (-) True XLOC_010618
TCONS_00022145 lncRNA upstream 67752 20923482 ~ 20927125 (-) True XLOC_010627
TCONS_00022146 lncRNA upstream 75855 20931585 ~ 20934597 (-) False XLOC_010625
TCONS_00020812 lncRNA upstream 75855 20931585 ~ 20934737 (-) False XLOC_010625
TCONS_00022147 lncRNA upstream 75855 20931585 ~ 20934737 (-) False XLOC_010625
TCONS_00020810 lncRNA upstream 75855 20931585 ~ 20934737 (-) False XLOC_010625
TCONS_00020804 mRNA downstream 97580 20529200 ~ 20707742 (-) True XLOC_010624
TCONS_00020800 mRNA downstream 312523 20318400 ~ 20492799 (-) False XLOC_010622
TCONS_00020799 mRNA downstream 369847 20318400 ~ 20435475 (-) False XLOC_010622
TCONS_00020797 mRNA downstream 511086 20265499 ~ 20294236 (-) True XLOC_010620
TCONS_00020794 mRNA downstream 767059 20012190 ~ 20038263 (-) False XLOC_010617
TCONS_00020814 mRNA upstream 177903 21033633 ~ 21038015 (-) True XLOC_010628
TCONS_00020815 mRNA upstream 182790 21038520 ~ 21047872 (-) False XLOC_010629
TCONS_00020816 mRNA upstream 184524 21040254 ~ 21047483 (-) False XLOC_010629
TCONS_00020818 mRNA upstream 275285 21131015 ~ 21140097 (-) False XLOC_010631
TCONS_00020819 mRNA upstream 275326 21131056 ~ 21140098 (-) True XLOC_010631
TCONS_00020803 other downstream 312626 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020802 other downstream 411513 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020793 other downstream 834955 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020792 other downstream 922375 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020779 other downstream 1381189 19422295 ~ 19424133 (-) True XLOC_010607
TCONS_00020809 other upstream 39382 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020827 other upstream 595425 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020829 other upstream 600224 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020844 other upstream 951692 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020846 other upstream 967004 21822734 ~ 21823249 (-) True XLOC_010645

Expression Profile

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