RNA id: TCONS_00020810


Basic Information

Item Value
RNA id TCONS_00020810
length 2370
lncRNA type read_through
GC content 0.39
exon number 5
gene id XLOC_010625
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20805322 ~ 20935507 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTACTTCGTAACAGGGAAATATACAGAGGCTTTCTGGAGACCAAACTTCCTCATTTtagaaacagaaataaatgtaaCGTTAGGCATAATGTCTTGGAACAAACGTCTATTATGTTCTTACAGCGCCCGAGACCAAACGTTCTCTTTATCTATTATTGTTTTCTCTAAATATTTAGTACCTGAAATGAGTGTCGTGAAGTCTTCCGGTACAGACCGCATTCTGATAAATCGCTTGACCCAGCAAGATAGCCTTCGAAACGCGGAAGTTAAGTGGACTCGACTGAAATACGGAAGAGACGACTGCCTAAACTAAATAAACCACTATTCAAATTAGACACTGTTATTTATCACGTTATCTCCAGCAGGCGCATTTGGGTGCTCACTTCAAACAGTGCACTGGGGAAAGAGACGTTTCCTCGTCCAGTTTTAAGTACTTGGTTTGTCATTATACACAGAactattttgcatttattatatAATCCATTGGGTTTTGTGACGCAAATGATGTTACCTTGGATGTTTGATTAGCATGCCATGGGGCCAGAAAACAGATGCTAAATATTAAGCATGGCATGCAATTTTATTTAATCTGAATCTAGAACATGAAACTTAATTGCTTTCTTTGCAAAGTGAGAGTCCACATTTCATGACTTCGATGGGCCTGCTGTTTGGAGTGGGGCCCACTTATCCTGAGGAGGGAGACAGGTGAAGAATGGGGGTGATGCACAGCTTTCACAAGGAAACACATAGCTGTCCATCTCCATCTGGCTCTGTGCTTTCGCTCTGTGCTTTCGCTCTGTGCTTCTCCGCTGTTTCACAGAGATTGTGGAGAACAGATCCCTGCCAGGAGACCTGCCCTTTGTCACCTGCTCTGTACCTCTCATAAAGGATGATAATCCATCTGGTGTGGAGGGGGAAAGAGAGGTGAAGTGCCCTTTGACCTTTTGAAGGAGAGTGGAGCCGCTTCATACCTCATGGTCCTCGGCCGAGCTTGTTTGATCTGGACTCACCTCAGTTCACACGTCTCAGCTTCTGGCACCAACCCAGAAAGAGGAGGGATGTGATGTAGAGCTGGTCGGAATTGACCAGTTTATTGGAAGAGCCCGAACTCAAGTTTTGTGAAGACATACAGTACCTCTGAAAGTGCACCTAAGATGAATGAGGTCACCAGCAAATACTATGACAATGTGACAGGGTACAGAGGTATCTGTGAAGTTCAACTTTGTGATGGATGAGATGGTGTCTTTGCCTTGCGGCCTCAAAGGGATTAGGCTGCTCAGgtgttgtttttaaaagacttAGAATTAGctcacatttaaacatttaaactgtCTTTTGACACCACTTTCACCACCTTTTTGGTAAAAAAGAAGATTGCCCCCACCCTGCATTGCAGTAAACCTTAAGATTATGTTTGGTTCATgacaacaaaattattttaagtgatatttaaaattgtacatatgCAACTTTGTAAAACTTTGGCAGAGATTTAATTCTTTGGTTATTAATTACTGTAAATTTATTCATGAAGCTTTTCTTGACGCTTTGAGTTGCTCAGTTCCACTGGGAGCAGTAACCTCTGTTAGTCTTTTGATTCAGCAGTCCACACTTTGGCCTCATTGCAGCCTCAGGAGAATAAACACTTATGCTAGATGTAAAGAGATGTTTGAGAAGCAGACCACGTAAGTGCAACCCGAAGAAGAATAATTGCATACTTCAGGAATTCTATAAACATGATCTATGAGATAATATCATGCTTCATAGGACTAATTTGTTCATTTGTATTCTGTGGTGTTGCTGTGGTTGGCCTCTGTTTAAGATCCCTTAAAGGGATGTTTTTACTTAAAATGTAacagtctgtcatcatttatctACCATTATGCCATTTTATCAGTGTTTCTAATGCAAAACGCCATAAAGAGGTATTAACTGTTTTTCTTCATCCAGTAAAAATCCAAAAACACCATTGGATATTTTTGTTCCAAATATCTGCTAATGTGTTGATTGCTGATAGATTGACAAtgcctttaagtttttttttcattataaaatacaatgcacaatttttatatatagattttttttttattgttgttgttattattattatttttttttattaatttttttggtggggtagatatttttgtgtgtgttgctgtttatctgtttattttggTTATTCTGCTGTAATCTTACTACACCCTTAAAATATCTGCTTGAAACCCACCTGCATAGGAATAACAAAAGGGACCACCAAGATTAAATGCAAGGTTTCCATGGTAACTAGTTGAAGGCTGACTGCACTGACTTTAAATGCCTACACAGACATTACAGTCTCAGTTATAGACTAGCAGTATGGGGG

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022145 lncRNA downstream 4460 20923482 ~ 20927125 (-) True XLOC_010627
TCONS_00020801 lncRNA downstream 559919 20328038 ~ 20371666 (-) False XLOC_010622
TCONS_00020798 lncRNA downstream 618919 20309370 ~ 20312666 (-) True XLOC_010621
TCONS_00022144 lncRNA downstream 619416 20309370 ~ 20312169 (-) False XLOC_010621
TCONS_00022143 lncRNA downstream 778860 20149577 ~ 20152725 (-) True XLOC_010619
TCONS_00020817 lncRNA upstream 105589 21040326 ~ 21044130 (-) True XLOC_010629
TCONS_00022149 lncRNA upstream 144852 21079589 ~ 21083019 (-) False XLOC_010630
TCONS_00022150 lncRNA upstream 145119 21079856 ~ 21082999 (-) True XLOC_010630
TCONS_00020820 lncRNA upstream 209932 21144669 ~ 21146623 (-) False XLOC_010632
TCONS_00022151 lncRNA upstream 283605 21218342 ~ 21224878 (-) False XLOC_010633
TCONS_00020807 mRNA downstream 61380 20805933 ~ 20870205 (-) False XLOC_010625
TCONS_00020808 mRNA downstream 61442 20805937 ~ 20870143 (-) False XLOC_010625
TCONS_00020805 mRNA downstream 75855 20805322 ~ 20855730 (-) False XLOC_010625
TCONS_00020804 mRNA downstream 223843 20529200 ~ 20707742 (-) True XLOC_010624
TCONS_00020800 mRNA downstream 438786 20318400 ~ 20492799 (-) False XLOC_010622
TCONS_00020814 mRNA upstream 98896 21033633 ~ 21038015 (-) True XLOC_010628
TCONS_00020815 mRNA upstream 103783 21038520 ~ 21047872 (-) False XLOC_010629
TCONS_00020816 mRNA upstream 105517 21040254 ~ 21047483 (-) False XLOC_010629
TCONS_00020818 mRNA upstream 196278 21131015 ~ 21140097 (-) False XLOC_010631
TCONS_00020819 mRNA upstream 196319 21131056 ~ 21140098 (-) True XLOC_010631
TCONS_00020809 other downstream 36410 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020803 other downstream 438889 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020802 other downstream 537776 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020793 other downstream 961218 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020792 other downstream 1048638 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020827 other upstream 516418 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020829 other upstream 521217 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020844 other upstream 872685 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020846 other upstream 887997 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020856 other upstream 978178 21912915 ~ 21917325 (-) False XLOC_010651

Expression Profile

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