RNA id: TCONS_00022145


Basic Information

Item Value
RNA id TCONS_00022145
length 3644
lncRNA type read_through
GC content 0.34
exon number 1
gene id XLOC_010627
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20923482 ~ 20927125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCTCCAAGTCTTGCAAATTCGCCGCTCTCAAATTTGTGACTCAAGGAAGATATAATGAAATATCGTGccgggttaaaaaaaaaactattttgctgATTACGGCCGTATGGGGACCGCGGTGCCATTAAACTATTGCTTTCATGGAGACAAGGTTGAAATTGGACCGTATTGCTTGTCACATGATTACCTCTGTCCAATGACAATTTGGGGTTTAATCAAAAGAAGCCACTGTCTGTGTGATTGATCGAAAAAAGTCCGAGAGGAACGCCTCACTCTCTGGGACGGGCTAGTTTATTTACGCATTTATGGTCAGTTTGCCCGCTGCTCGCTCCGTAGATTACATGTATAGCCAGTACCTGAAAAGAGTGACAGTGAGTCCGTCTGCTGTTTTCTTCATATTTAACGGTCCTCGGCAGGAGATCCCACAACACATCAACTGTTCACATAAAACACACCAATAGCTACGATCGAGGAATCCCATTAATCCCGAGTCTGGGTTTTTACTACTTTCTTAGGCAATGCGCGCTCCCTCTTGTAAATGCACGAGCAAAAGCGCGTGAGAGATTAAGCGCGCACACATTGCGCGTAGACAAATTCTTTCAAAGCCTTGACGCGCTCGCGTTCACACGCGCACTGACGCGTTATACTTAAATGTATTACTTCTTTATATTTATTGCTTATTATTTAGATATTGTAAGTTTTAAAAACCTGAGTTTTATTCGTAGATAGTTTCTGTATGTTATACATTTAATCTCTATACCGTTATTAAACTTAAATGTTGATATCCAATGTAGAATTTAAGAAAACATAAGGTCATCAAAAGGGaaaataatatatcaaatataaaacgtttaaataatataattgtgtTTATTGTAAATGAGGCTGTGCATATTTTATTTGAACTGATTACAATTAGCCTTCAACAGTGTCACTGGCAAACACATTAAGTTTTTAatgtgagataaaaaaaaaaatcaaatagttATTTGTATGTTCAAGAATGTGTCTTCTGTGTTGCCCTTAGTCGTCTTTAGCTAAGTAGGTGTAGGCCTCGAGCACTTTATTGCTTATATTCCAAACAAAGAGCCCTGGAAGCCTGCACGCTATCAATCTTACACGCCAAAAGGTCTGACAGCTTAGTGCCCTAAGAACACATTTAAACCATCTAACACTCCCTTAGATCATATGTGGCCAGGAAGAAGAGAACAACGTACTCATGGTTAAGAGTTTgttcattttatacattttatatttagaaGTGATATTTCTCGATTATGGGATTGACCTTGATCATAATTTCATATCGGATGTGCTTCGAAAGGAGGATTTTCTCGGACCAAACATTATTTGTGTTATATTTTCGTTTTTTGGAAAGTCAGCCTTTATCGAAGGGTTGGGAATAAATAGGATTATATATTGATTGTAAGAGGAAAAACGTGTTTTTGTCAGCTACACAGGAGCTATTGTGTAAAGAAGAACGTGGGTGTCGGCATTCTTTAAAAATGCCTACTACTTCCTACACATTTCTACTACGAACgaaaaatcatctttttttttcccacGAACTGAACATCGAAATCAAACAAGGATGTATCTTTACATGTACTGTTAAATGttatattagttatttattaatctatacgttaaaatattgaataatatgtaTAATGCATTGTATGTATTCTAATCAGATATGTTTTTTTTGGATATGTAAATTATATTGCAGTGTTTtgaattaaacttttttattttatggaaAATTGCAGTTGAGCTGTACATTCCCGACGACGTTGCAAATGTATGAATGCATGCACATGAATGCAAAATGTATTCGAGTTCATGTTCTGATATTACagaatctgaattgtgtttttatgtttgtcaAATTGTGGATAATTGTCAAGAGTGTATTGGATGTTTTCCTATGTTAAAGTAACATTTACAAGggcgttttaattttttttcggtTGTTGTCAGTCACCTTGATTTAAATTAATGCAGGTCGAATATAAGCAAAAGTCTGTACAATCAGTGTGTgtataaagaaaaacattttgacattttaatgcGCGAGTAAATAGTACAAGAAAGAAAAACATCTTCAATTTTAAAAGTGGCGTTTAAGGACAAGTCGGGATACACTAaggaaatatttagttttaagttATGAATTTAATAATTATCTCATTATTTGGCAATTTTGCAGCTTTTTCTTCCACGTGCTGAGTAGGTGTTCCAGCATTTTTTGGGGTGCGTCTGGCACAACAGACAGCCCCGCTGACCgtctgttaaaataaataatgaattctgACGGTCTTAAAACGCAAGTTAAAAGTGAAAACTTGGCCTGTCGAATCGGCAAACAAATGAAGCGATCAATGTGCTACATTGAAAGCGAACGCATTAATTGGTGCAGTATATGCTATAGGCTACATTATATAGATAAGTATAAACGTATTAAGTTTATTACGCATCAAGTCTTCTACTACTTTTACATTAAGCCATATTACTTattatgctaataataataataatagacctAATAGtggaataatataaaataaatagaaatctgTTTAATAATACCCTAAtagtaacaatataataataataataacaacaacaacaacaataataataattattattattattaatattactttttattattatcaatattactaTCAGCCTTtattgtcatcattaatattagtGTTAATAGCAATGTACTGCGTTTCATTTTATGAATTAAAATTACCCCAGTTTGTaagactgttttttttctttcgaattgtaattagattttttctcttTGTAGTCGTCTTTTTATTTGTAGAcgaattaattagtttttttttttttgtttgttaataaaaTTCAGATGCTTTACTTGCATTCAGATACCTGTTTAATACCCTATTACATCTGATGATCGAATAAAGTTAGGATTGCTAACTCAATTATTCCACAATATCTCTCCAAATAGCTAATGCATTATGTACATGATATATGTTCAGCTGAAAGATCATCGTCTTAGAATACTGTGAATACTTTCTGAAGCCATTCGTTTGTGTAAAAAAGCCAGGATTGATCAGTGTGTATCCCTCACAGTGTGCTTTGTAAATTAGTGCGAGGCGTATATGGGGTGTTTATGATGTCTGCGAAGGCAGCAGCGGCAGTAGCTCTTGCAACAGTGGCGTTTGATGGATGACCCTCTACCCACACACATTGCACTCGGTCGTAAACGAGATCCAAGCTTCTTTTGTTGTTCTGGAGGTGTATGTCATTTCCGGGCATATGCACTATACTCCTGCTCGAGAGGAGAATTATGCAGAATTATGCAGGATATGACGTTCTGAGAAAATATCCCTTGACTTGCCTGGTGTTAAcacaaatgtaataatttattgtttaacCTCTTGATGCTGAAACATGTAATTAAAACAGGATAACTTGGTAAGTCAACAACCAGTGTCTAGGGTATTGTAAAGGATTGGACTTACAATTCTTTGTAGGGATGCCATATAAATCGTATTTTTTTTGGTTAGGCTACTGTACATTTAAGAACCCATCAATCAGTTTTGTATTCTATTTGACACGcaacaataatttaaaacaataaatggtAATATGTTC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048468 cell development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0001501 skeletal system development biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048589 developmental growth biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0048880 sensory system development biological_process
GO:0008283 cell population proliferation biological_process
GO:0040007 growth biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0031175 neuron projection development biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0009790 embryo development biological_process
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0070579 methylcytosine dioxygenase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020801 lncRNA downstream 551816 20328038 ~ 20371666 (-) False XLOC_010622
TCONS_00020798 lncRNA downstream 610816 20309370 ~ 20312666 (-) True XLOC_010621
TCONS_00022144 lncRNA downstream 611313 20309370 ~ 20312169 (-) False XLOC_010621
TCONS_00022143 lncRNA downstream 770757 20149577 ~ 20152725 (-) True XLOC_010619
TCONS_00021798 lncRNA downstream 880206 20041866 ~ 20043276 (-) True XLOC_010618
TCONS_00022146 lncRNA upstream 4460 20931585 ~ 20934597 (-) False XLOC_010625
TCONS_00020812 lncRNA upstream 4460 20931585 ~ 20934737 (-) False XLOC_010625
TCONS_00022147 lncRNA upstream 4460 20931585 ~ 20934737 (-) False XLOC_010625
TCONS_00020810 lncRNA upstream 4460 20931585 ~ 20934737 (-) False XLOC_010625
TCONS_00022148 lncRNA upstream 4460 20931585 ~ 20935033 (-) False XLOC_010625
TCONS_00020807 mRNA downstream 53277 20805933 ~ 20870205 (-) False XLOC_010625
TCONS_00020808 mRNA downstream 53339 20805937 ~ 20870143 (-) False XLOC_010625
TCONS_00020805 mRNA downstream 67752 20805322 ~ 20855730 (-) False XLOC_010625
TCONS_00020804 mRNA downstream 215740 20529200 ~ 20707742 (-) True XLOC_010624
TCONS_00020800 mRNA downstream 430683 20318400 ~ 20492799 (-) False XLOC_010622
TCONS_00020814 mRNA upstream 106508 21033633 ~ 21038015 (-) True XLOC_010628
TCONS_00020815 mRNA upstream 111395 21038520 ~ 21047872 (-) False XLOC_010629
TCONS_00020816 mRNA upstream 113129 21040254 ~ 21047483 (-) False XLOC_010629
TCONS_00020818 mRNA upstream 203890 21131015 ~ 21140097 (-) False XLOC_010631
TCONS_00020819 mRNA upstream 203931 21131056 ~ 21140098 (-) True XLOC_010631
TCONS_00020809 other downstream 28307 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020803 other downstream 430786 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020802 other downstream 529673 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020793 other downstream 953115 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020792 other downstream 1040535 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020827 other upstream 524030 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020829 other upstream 528829 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020844 other upstream 880297 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020846 other upstream 895609 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020856 other upstream 985790 21912915 ~ 21917325 (-) False XLOC_010651

Expression Profile

//