RNA id: CI01000364_00110528_00118790.mRNA


Basic Information

Item Value
RNA id CI01000364_00110528_00118790.mRNA
length 6698
RNA type mRNA
GC content 0.42
exon number 7
gene id CI01000364_00110528_00118790
representative True

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 110429 ~ 118790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACAAATTGAAGAAGATGAAAAACAGAGACAGCAAGAGGAGGAGAGAAGACGTTTGGAACGTTTGGAACGCGAGCAAAGGATTCAACAGGAGCTGGACCGAGAGAGTGAATCATCCAGACTCAAGCTTTCTCGAGCAACTGAGCGGCTTCGTGAAAAACAAAGCTTCAGAGGTCGCAAGCAACATCATGAACGCACACAAGCTCTCCATCAACAAATAGAAGACGACGCTGCTGCAATCGAGAGGGACGAGGTTACTGATGTTGAAGAAAAATTCAAAGACATTTTGTTAAAGTACCAGATCACAGAAGATAAAGAGATACAGCACTACCAGATCTGGGACAGGATTAAGACGCTCCAGAATGAACTTCTAGATCAATATTGTAGAGAAAACTACCTTTCAGTATGGTCTCAGTTTAGCTTTGATCATGCTATAGGATATAGCGAACTGTCTCTTACAGAGAAGCTCACAGTTCTTGAGGCATCTCTACAGTTCATTCTGAACAGTAGCAGTGCAGATGCTAAAGATGATGAAGATCAGCAGCTTGGCTGGGAGAAGAAGTATGACTTTCTCTTTGGTTTGGTGGAGCAGCTTCATTCCACAAATCCAACTTTGGCAGAACACATTTTATTAAATGTGCTTGACATGATCTCAGAGCTTTCACCACAAAGTAGGAAGATTTTGGGTCAAATGTTGTTCAACAGGATCTGGACACCAACAGAAGTAATGCTTTTCATTTGCAAAAGTCCAGCTATCAAATGTGATCAACTCGATTCAGTTCTCCACACAGCACAAACCTACCACCTGGACTGCATCCTCGTTCTCTCTGCTCTTACGAATGAAAATCCTTTAATGTTTCTTCAAGAACAAATTAAAAATGACAAGGACAAAGATGCTGATACAATTGTGAAGGAACTTCGTGAAGCAAACTGCCCAGAGAAAGTCTTGGTGCTGTTGAAGGATGTGCTTAGATACGTAGAGTTGGAACTCCCAAAATATCAATTGGTGGACCTTACTGAAGAACAAATCGCAGATTTGAAAAGGAAGATAACATCCCTTAATCTTACAAACCCAGATATCAACATTCTGAAAGATGTATTAATTGGAATGTCAATAGCAGTGCAAGACTGCTCAACAATTACCGAAAAAGACAACACGAAGATTCAAGGTTATTTTCCAAGATGTACACAACTAGCATCATTGCTTTTGCTCCTCCTGGCACAGCTGACAGAAGATAAAGGATGTCTTCTAGAGATTGGCACAGGTGAGGGCAAGTCCTGTATCTTAGCCATGTTTGCAACAATTCTGGCCATTCGTGGAACAAAAGTGGACATTGTGACAAGCTCTCCGGTTCTAGCCAGGCGAGATCAAGAAGAGTGGAAAAAGTTTTTCGAAATGTTTGGCGTCACCTCGTCTGTAGTACCTCCACAGTATGCAAGTGCCTATTCACAACAGGAACAAGATGAACATCTTAAAGATGCTTACAGGAAACAAATAGTATATGGCACAGTGGGAGTCTTTGCAGCAGACATACTTAAACAGGAATTTGAGAAGAGGACTACTCGCGATACAAGGCCATTTGAGCTTGTAATAGTGGATGAAGTGGACTACATGACCTTAGACAGTGGCGTTCAAGTAACATTCTTGTCCCATGAATCTAGTGGATTTAGGCATGTGGAGCAAGTCCTTTCCAACATATGGGCCATGATATCTACTTGTCAACCGATTGAAATGCTTGAAACAAGGGAAATAAAATGGGCGACAAGGATACAGTACTTTCATAAAGCTGCAACAACAGCCGTTATGGGACTAGAAACATCAGAAAGCTTTTCAGCAAATGAGATCTTGCTACCTGGAGTGAATTTGGGATTCTACACCCAGGAGGATATTGAAATGATACATCAATATGATGTGAAAGAGGACATGTCGTCTAAAGCATTATCTGAAGTCATGAAGAAACTTGTAGTTTCACAACAGTACGATCTTCTGTGCATATTTGAGGAGGTCTTGGAAAAGAGTGCAGTGTTTAAGTGCTATTCTTTAGAGAACAAGAAAGCAAAATGTTTTGAAGCTCAGGAAAAACAAGGTGACCTTAATGTTGAAATGTTACTGCTGGAAGGAGGACTGGCATGCGAAATCATGTCTGAGAAATCACTAATTGATGCTACTGTGAGCACAATAAAGTCATATATCATGTACTCAGATAACCCTCAAACAGCCGAAAAATCCAACAACTTCACTGTCATCCCTGTTTTTTTGAAACGCTACATTGAAAATCAGTTACCAGTTTTTGTTGAGAATGCACTAAGGGCTGTTGAGATGTCACAGGGCCGGGAATACATGATTTACACCTCACCGGCCGCTGAAAGAGAAGTTGCTGGCACTCATGACAGAGACAAGTATAATGCAATAATTCCACTAGACTTCAAAGCGAGCGGTGTGCTGGAGAAAAACAAAAAGTGGGGTAATGGTCTGCAACAATTTTTGGAGTTCAAGCACCAACTTGCGATTTCACCAATATCCAATGTGACAAATTACATGTCAAATTTCCATTATTTTAAAAGGTATCTCAGTGGGAGTGGTATTTTTGGTGTTTCTGGTACATTAGGAGGTAAGGCAGATCGAGATTTTCTGGCAAGACATTATAAAGCACAGAGCTACACTGTACCTGCATATCGCCATAAAAGGGTGGTGGAGCTTCCAGTCATCCAGGTAAAAGGTGGGAATGACCAATGGATCCAGACTATTTGCGAAACTTCATGGAAAGTAGCAGAGAGAGGACAGGTTGTCTTGGTAATTTGTGAAGATGTTAAAACAGCAGATGAACTAAAAGAGAAAATACAAGGCAGCGGCAGATTCAAGGCAGAACAGATTACTCTGTACACAATCAGTGAGAAACACAACATTGAAAGAGAGAAATTCTGTGCAGGCAGAATCATTATTGCTACAAATCTCGGAGGTCGGGGGACAGACATAAAGGTTGATGAAAGTGTGAATAAGTGTGGTGGTCTTTTTGTTCTTCTTACTCACTTTCCTCAAAACCGAAGAGTCGAGAAACAAATATTTGGTCGTACATCTCGAAAAGGCAATCCTGGGATGGTCCAGATGGTTGTGAACTGTGATCATCTCGCACCAGCTTACCAAGGTCAGTCTGTGGAAATTATGCGCCAGCTAAGAGAGGACTATGAAATTAAACGAATCCACGACATGGAAAGTGATGAGCTGGTTGAAATAAACCTAAAGGAAAATCTGTTCTCCACATTTTGTAAATTGCTGAAGGACTTTGATAGGCATTATACAGAGCAAGAAAAACTGGACCCCATGCGAATGCAGCTTAAAAATATTCCAGATTGCTTTAAACATCATCAACCTAAGTTTGATTATCAGCCTGCCGTCAATGCTTTGAAAGAATCTTGGGCCTTGTGGTTGACCCTTCACGAGGATCACATCAATAGACATGATGACTTAGGAGAACTTAAATCAGATCTTATCAGGACAGTAAACGAAACAAGTGGAAAGCTGCTGCGAGGAGAATGTGATAATTTTTATGATCACATCAAACAGGCAATTGTAAGAACTGATCTACACTGCCGTGATAAATCCAACAATGCCTTTGGAGCCAAATCCTATTGGCAAAAAGTTGCCAACTCTGACCCACACTACAAGGCTGTGGCACTCTATAACCAGGCGTACATCACCATCAACCTCAGTAAGGGTAACTATAAAGCAGACGCTATGAAACTACTGGAAGATGCAAAGCAATCAATTGACGCCTATGTCACAGAAGTTTCAAACACAATGGTCTCATGTAACTTATCAGTCACTGGTAACAAAGATCAGAAAACAGACAAAAACAACAACTTTCAGAGTCAAATGGAGGCCAGAATGAACATCTTTAAGTCTTGGATGACGTACATTGATAATGCATTGAATAAACTTAAAGAGCTGGAGGAAAGCAACAGTGATGCCATTACAGAGGACTGTTCAGTCTACATGCTGTCTGAAGAAAAGAACTTCATCATCACTAATGAGCTGAGATCGTTATACGACTACGGCCTGGGTGTTGTTTTCGAGGTGAAAAAGAAGCCCAAGTTTTGTATAGATGCTTTGATATGTTTCTTTCTCGGGGTGGTACAGGTTCTCGCTGGGGTTCTTGTTTGTGCGCTGTCACTTGGAACAGCCAGCCAGTTTGGACTGGGCCTGATTGCAGAAGGAGTGTCTGACATGATCAATGGAATAGAGGGGATGATAAAGGGCACATTTGATTGGGCGTCATGGGCAATATCTAAGAGTATCAGCATTGGGCTTTCTTTGCTAACAGCTGGCTTTAGCGTTATCAAGAAAGCAGTTACTTCAGTGTTTAAAGTGACAAAAGGTCTCCTCAATGGTACCAAGTCTTTCTCTTCTGTTGCGAATGAATTCATCAAATCAGGAAAGGCAATGTTTACTTCATTCAAAGGAAGTGCTCAGTCTGGTTTATCATCACTCAGTAAAGAATCTTTTAAGTCTGCAATGAAAAACATGACATCTTCAACAGTGGTCAAACAGAACTTCAAAGCGGCATCTATGTATGCATTTAAAGAAATCGGGAAACAGTCTGTGCTCACTGCCATGAACTATGCAATCGATGCAGCACTTCAGGAAGTCTTTAAGAAGATTTTACAAAGCATTTTTCAGAATGCTGTTACTTCATCAGTGAAGCAAAGCAGTGACCTGGATCAGAATCTTGTCGAATTTATCAGCTCAGGCATTCCGAAAGCTGCCTTGGAAAAAGAGAATTTCAAGATTGACCAGAATTATGAGAACCAAATAAAAAAATCAGTTGATATGTTCCTTGAAGAGATAACTCCTCACCTCATACTGGACTGTACCAAAGAACTGGATGTTATCAGCAAACTCTCTGAGGTGTGTGACACAGCAACAGAGATTATGAACAAAGAGAGTCAGTCGGGTGTGCTTGAAACGGCAAAGCTGGTTCTGAAAGTAGCTGAGTATGAAACTAAATTCTGTCAAATACTGGGTGCCATACCAACAAAGGAGAAAATACAAAATAAATTTATTCCTGAATTACTGGAGAGCATCAGTGAGCTTGAGAAAGAAATGACAAAGTATGACCAAGATGGACGACACAGTTTACAGGATGTACAACGCCTTAAAGGAGAACTTCTGCAGATTATCGCACGGAAAGTTTCTGAGCAATTCATCAGTTCCTGTTCTGAACATATGACTTCTTTAATGACCAACACATTTAAGAGTGAGTTGAACAGTGCTGCAGGACAAGCAGTAGATAAAGTCATGCGCAGACATAAGACTCAACAATTCTTTGATGATCAGAGAGAAAAACACAACAGGAAATCTGCGAGCCAAAAGGAAGTGGAACAGCTGTCAGATGAGGACAAAACAAAACTAATGCAGTATACAGAAGATATGTGCAAAACTGATCATCCTGTTACAGCCCTCGATGTATATGTGCTCACAAAAAGTAACCTGCTCGATGGAAAAGGGATTCAACTCACAGTCGTTGATGAAAATGGAAAACAGCTCACTGAGGAACGTTACCCAGGAACCACCAAATCAGCAGGCGATATAAAACTGAGAGTAACTAAATCTGCAAAAGCCCCTCATACATTACAAGCTGATGCACATCTGTACAGCGGTCATTTTGACATTGTCCAGGATGATTGCAAGATAATCAGCGTTAACTCGGATCATCAGAATGCTCTTTATCATGCTGTAGCACAAGCAACTGGCAGCAAGATGGAGGAGGAAGCATTGGTGCTACGCAAGAAAATCCAGACAAACCTTGAATCGTACACACCCCTGCTTATTCTCCAGAGAGGATACGACTTCTGTCACCAAAACCCCAGGAAATACAGCATAAATGGAGGAAGTAGAAAGGAGACAGACGTTGCACTGCAGAAATACTTACAGAGTGTTAATTTCATCAGAAGTGATGAACGTATCCTCATCAAAATGTACCATCTTGGATTTGTTGGTGAATATAACAGTGTTCAAAGTGCTCGGAGGTCCAGTGAGAACAACAAAGGAACACTCAACACGAGCCATATTCCACCGAAGGACTCCATCAGACTGGCTCAGACGGTCATAGAAAACTCAAACTCAGTGAGCGAGATTAAAAATAAAAACCCGGAGCTTTATAAACTGATCAGCAGCATAAAGAATGACAACAATGGATTGAACCTGATTGCCATGGAGGTTCTGGGACAAGATCACAGACAAGCTTTAACTACAGGCCCAAGCAGCCGCTCACAGATGGCCAGGAAACTTCTAGCAGACACCATGATTAATGGAGACGTGGAGCTTCTGCTGAAACGCTGCATGATTCTGAACCACCCTCTTACCTCACAAAAGCTCAGAGAAGCTCTAGGTGAAAGCATTTCGTCTCAGTGTCGCGTTTTGTCCGATGAAGGCATCCGAGGCTACTACAAAGCAGGATACCGTAACCTGGTGTCAGAGTACAGCCGCATGGGAATCCTGGATCAGAAACAGCGCGAGCGTCTGGATGAGTGGGTGAATCAGGACCTGCATGAGGACACCAACACTGTCGAATACGGCCAGCTTCTGCAGGGATTAAAGTGAAAATGAACACGTGATCACTTCAGATGAAGATGATGGCTATAGAACATAGGAAATGATTGATCTCTGCCACTGAAACTGCATTTACTGCAAAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596708 lncRNA downstream 39056 70819 ~ 71373 (-) True G520128
TU596658 lncRNA downstream 59020 20310 ~ 51409 (-) False G520100
TU596660 lncRNA downstream 59582 20310 ~ 50847 (-) False G520100
TU596657 lncRNA downstream 59991 20310 ~ 50438 (-) False G520100
TU596646 lncRNA upstream 19665 138455 ~ 139295 (-) False G520098
TU596723 lncRNA upstream 29561 148351 ~ 150669 (-) True G520143
TU596727 lncRNA upstream 61538 180328 ~ 197248 (-) True G520146
TU596674 lncRNA upstream 71819 190609 ~ 202322 (-) False G520105
TU596676 lncRNA upstream 71819 190609 ~ 202322 (-) True G520105
CI01000364_00081223_00107594.mRNA mRNA downstream 2636 81180 ~ 107793 (-) True CI01000364_00081223_00107594
CI01000364_00037534_00041491.mRNA mRNA downstream 66710 36674 ~ 43719 (-) True CI01000364_00037534_00041491
CI01000364_00002233_00008090.mRNA mRNA downstream 102221 2233 ~ 8208 (-) True CI01000364_00002233_00008090
CI01000364_00373309_00374559.mRNA mRNA upstream 254519 373309 ~ 374559 (-) True CI01000364_00373309_00374559
CI01000364_00391142_00398789.mRNA mRNA upstream 272161 390951 ~ 398930 (-) True CI01000364_00391142_00398789
CI01000364_00455879_00458332.mRNA mRNA upstream 337089 455879 ~ 458332 (-) True CI01000364_00455879_00458332
TU596682 other upstream 131552 250342 ~ 270995 (-) False G520108
TU596843 other upstream 332243 451033 ~ 451562 (-) False G520248
TU596844 other upstream 332243 451033 ~ 451562 (-) False G520248

Expression Profile