RNA id: CI01000364_00512592_00513897.mRNA


Basic Information

Item Value
RNA id CI01000364_00512592_00513897.mRNA
length 1975
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000364_00512592_00513897
representative True

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 511831 ~ 514181 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATAAAACAACGTCTAGACAAAAAAGACAAAAGCTTCAGTTGAATTAGGACAGTTTTTTTTTTTTTTTTTTACAGTTTCACACCTGAATCTGAGGAAAGTTCAAGAGAAGATAATCACAGGACAACCCTCTGCAGAAGAGGATATTCATGTTGAAAAGGATAACAACAAAAAACAACAAATAAGAAGAAAACTTACAAGAAAAGAGAGGTAAAGACATTTTGAACAGACTGTGCTATTTCATATCTCTTTGGGTTTTTGTTTAGAAGAACAGCACAAAGAACATTTTGGACAAAACTGGAACACACAAAATCAGTGAAAGTCATATTTTCCCCCTTTTTGGCTTATTTTTTCATATTTCTCTCTTTATATCCTCACTGAGAGAAAATAAACAAACAAAAAAAAAAGGCAGTTAATTCAGTTGATTGTTTACATTCTAAATCAACTATGGCCAGCGCATCATCTACGCCCCGCCCCTTCATTTACCCTCAGAAGAGTTCTGAACACTCCAGGAGCTGCTCAGACACAAGAGATGAAAGAAAGGCCTGAAACACTGTTTGCTGAACAAGACAACAGAGTCATGACCAACCTGCTCTTATACACTGAACACAGCTCTTTATGGCACACTGCCATCTGTCAACATTTCATCTTTACCAAAAAAAGAGGCATCTGTAAAGGCAGACAGATCTTAGCATTTGAAGATGCTGAAAAAATGATGAAACAAGATATTTAACCCTGAACTTGTCTCAAAATGGTACTGTCATGGTCCAAGGATCAGAGTCTGCTCTCAAAGTCTTCATTGAAGATTTTGAACATATAAAAACACTGGCACTGTCTGATGAAGACGACAACAAGGATATAAACACTGATGCCTCCCCTGGAAAATCAGTCCAAAAGATGACAGTGACCTCAGCAACTGTGATTCCTTCTCCAAGGTTAAGAATGAAAGACAATTTTTCACTTCTGGAGATCCACAGCTCCGCTGCAGAGGACCCGAGAGAAACGCACGCTCTTATCCTGACTGACTCAAATGGGAAATACATCAATGAGAAACTTCTATTCCCAAATATGAGAGCCAAGAAAATCTGGTGCCCAAACACAAGAAGTGCTTTTCAGATCCTGTCTGAGAGAAACCTGAATGAAAACTATAAACACATCATTATCAACACAGGGACAAATGATTTAAGGGCCATGAAGGGACATGTGGCTCCTGTGATCAGAGAGGTAGTGATCAGAGCCACACAACGTTTCCCAGTGGCTAAAATAACTCTGTCTGCACTACTACCATGCACTGATGTGCCATTCCACGTGATCCATGGAAATAATGTGGAGCTTTCCAGAAGTTGTGCACTTATTCCTAATGTTCACCTCGCCCATCACAAAGACATACGGCCTCATCATATGTATGACCATGTACATCTCAAGAAGCAAGGAGTGAAAGTCTTTGCCAGAGTGCTGAAAAGCACAGTCCTTGGAAACACACCAAGAAACAGCAGAAACTCCAATGACAAGAGAAGATCTCAGTCACCAAGAACCATCCGTCCTCCAGCAGAATCCAGAACGACCACAAGACCTCCATCACAACACAAGAGCTACGCAGCGGCAGTTCAACAGCCACAAAACCCTGCAGCTGCTGAACTCAACCAGATAAGACATCTACTGAACATCATCTGCTCCAGACTGAGGACATAACCTGCATAACTCACACACACTTATATATATGTATACACACACACACACGTTACAGAAAAAACTTATTCATGAAATCATTTAAAATCAGTTGTTGGAATATACAGGGTCTGCACTCTTCTACTTTTGGTAACAAGACTGCAGACCAAGACTTACTCAGCAGTGTAACAGATATGGACAGATATAAGATCTGTATCTTTCATGAGACGTGGTGTTGTAGCAATGAGACTTTACATTGTCCAATAGGATACAAGGAAATTGTTGTTCCTTCATCAAAAAATTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596858 lncRNA upstream 47749 463745 ~ 464082 (+) True G520260
TU596856 lncRNA upstream 48487 462572 ~ 463344 (+) True G520258
TU596855 lncRNA upstream 49606 462019 ~ 462225 (+) True G520257
TU596850 lncRNA upstream 54770 456784 ~ 457061 (+) True G520252
TU596836 lncRNA upstream 65054 446461 ~ 446777 (+) True G520244
CI01000364_00471523_00472629.mRNA mRNA upstream 39010 471523 ~ 472821 (+) True CI01000364_00471523_00472629
CI01000364_00458726_00460323.mRNA mRNA upstream 50202 458726 ~ 461629 (+) True CI01000364_00458726_00460323
CI01000364_00400175_00427556.mRNA mRNA upstream 84255 399374 ~ 427576 (+) False CI01000364_00400175_00427556
CI01000364_00382475_00385399.mRNA mRNA upstream 125714 382475 ~ 386117 (+) True CI01000364_00382475_00385399
CI01000364_00294611_00295771.mRNA mRNA upstream 215881 294401 ~ 295950 (+) True CI01000364_00294611_00295771
TU596526 other upstream 174724 309368 ~ 337107 (+) True G520013
TU596517 other upstream 187600 241321 ~ 324231 (+) True G520009
TU596524 other upstream 256825 250300 ~ 255006 (+) True G520012
TU596480 other upstream 326788 180347 ~ 182853 (+) True G520001
TU596513 other upstream 465985 44426 ~ 45846 (+) True G520007

Expression Profile