RNA id: TU596663


Basic Information

Item Value
RNA id TU596663
length 392
lncRNA type read_through
GC content 0.41
exon number 2
gene id G520100
representative True

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 20310 ~ 318572 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACACACTGATCTCACTGTCTACATGAGGATTCATTACACACATTTATTCTGACATGTTATTTCACTGACAGAAGTTCAGCTGTAGTATTAATGAAATGAAGAGAAAATAAGACTCTATAACATCTCACTGTTACTGATTTATCATGAGCTCAAAGCATTATGGGTAGAATCTCTCTACAGTCTATTCTGATTCATCAACACAGTTTCACTGATCCAGAACAATAAACCCAAAACCCAGGATAGAGCGGTTGAGTGAATGTGGTCTGGACTGTGTGGATGAGGCTCATTGTGTCTCCAGAGACGCTGTAGAAGGACAGAGTTCCTGCACTGTGATCCACATACACTCCTATTCTCCTGCTGATGGACTTTACAGGGAGAACAGTCGCTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596683 lncRNA downstream 14605 250124 ~ 270586 (-) False G520108
TU596684 lncRNA downstream 14605 250342 ~ 270586 (-) True G520108
TU596652 lncRNA downstream 20427 263008 ~ 264764 (-) False G520099
TU596653 lncRNA downstream 20427 263008 ~ 264764 (-) True G520099
TU596746 lncRNA downstream 59832 224308 ~ 225359 (-) True G520159
TU596813 lncRNA upstream 106151 424723 ~ 425045 (-) True G520221
TU596830 lncRNA upstream 122831 441403 ~ 441651 (-) True G520238
TU596845 lncRNA upstream 132625 451197 ~ 451562 (-) True G520248
TU596857 lncRNA upstream 144414 462986 ~ 463228 (-) True G520259
TU596861 lncRNA upstream 150148 468720 ~ 468944 (-) True G520263
CI01000364_00110528_00118790.mRNA mRNA downstream 166401 110429 ~ 118790 (-) True CI01000364_00110528_00118790
CI01000364_00081223_00107594.mRNA mRNA downstream 177398 81180 ~ 107793 (-) True CI01000364_00081223_00107594
CI01000364_00037534_00041491.mRNA mRNA downstream 241472 36674 ~ 43719 (-) True CI01000364_00037534_00041491
CI01000364_00002233_00008090.mRNA mRNA downstream 276983 2233 ~ 8208 (-) True CI01000364_00002233_00008090
CI01000364_00373309_00374559.mRNA mRNA upstream 54737 373309 ~ 374559 (-) True CI01000364_00373309_00374559
CI01000364_00391142_00398789.mRNA mRNA upstream 72379 390951 ~ 398930 (-) True CI01000364_00391142_00398789
CI01000364_00455879_00458332.mRNA mRNA upstream 137307 455879 ~ 458332 (-) True CI01000364_00455879_00458332
TU596682 other downstream 14196 250342 ~ 270995 (-) False G520108
TU596843 other upstream 132461 451033 ~ 451562 (-) False G520248
TU596844 other upstream 132461 451033 ~ 451562 (-) False G520248

Expression Profile