RNA id: TU596543


Basic Information

Item Value
RNA id TU596543
length 333
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G520020
representative False

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 56322 ~ 119677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTTTTTTTTTAAAATAATCAGATTTTATTGGCAAAATTTTCAGAAAATGAGATCAGTTACAAGAATGAATCCATTCACCAGCATCATATTGATTAGTAACAAAACATTTTACATGTCCCTGAAGAATTGTGTGATTATAAATTCAGCACAGTTTCAAGTAAATGGTTTCACAGTTTAGTTTTTTTGTTACATTTAATCAGAGAGAAGCATAAAATAGGGCATGTTCCTGATCTACACTACAGAGCAGTAATGTGTACATCAGTCTACTGAAGAGAAGCTGAACATTGCTTTTTGAACATTGCATTGATTTTATTACTGTTACATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596511 lncRNA upstream 4914 20274 ~ 51408 (+) True G520005
TU596510 lncRNA upstream 5485 20274 ~ 50837 (+) False G520005
TU596508 lncRNA upstream 5892 20274 ~ 50430 (+) False G520005
TU596536 lncRNA downstream 1208 76113 ~ 111638 (+) False G520020
TU596539 lncRNA downstream 1208 76113 ~ 115748 (+) False G520020
TU596541 lncRNA downstream 1208 76113 ~ 119677 (+) False G520020
TU596542 lncRNA downstream 1208 76113 ~ 111638 (+) False G520020
TU596547 lncRNA downstream 1208 76113 ~ 111638 (+) True G520020
CI01000364_00151094_00203772.mRNA mRNA downstream 75913 150818 ~ 203857 (+) False CI01000364_00151094_00203772
CI01000364_00263052_00264410.mRNA mRNA downstream 188080 262985 ~ 264747 (+) True CI01000364_00263052_00264410
CI01000364_00287825_00289294.mRNA mRNA downstream 212142 287047 ~ 291072 (+) True CI01000364_00287825_00289294
CI01000364_00294611_00295771.mRNA mRNA downstream 219496 294401 ~ 295950 (+) True CI01000364_00294611_00295771
CI01000364_00382475_00385399.mRNA mRNA downstream 307570 382475 ~ 386117 (+) True CI01000364_00382475_00385399
TU596513 other upstream 10476 44426 ~ 45846 (+) True G520007
TU596492 other upstream 23343 31744 ~ 32979 (+) False G520002
TU596480 other downstream 105442 180347 ~ 182853 (+) True G520001
TU596517 other downstream 166416 241321 ~ 324231 (+) True G520009
TU596524 other downstream 175395 250300 ~ 255006 (+) True G520012
TU596526 other downstream 234463 309368 ~ 337107 (+) True G520013

Expression Profile