RNA id: TU596539


Basic Information

Item Value
RNA id TU596539
length 4637
lncRNA type read_through
GC content 0.40
exon number 4
gene id G520020
representative False

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 56322 ~ 119677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGGCTGCTTGGGCCTGTAGTTAAAGCTCGTCTGTGATCTTGTCCCAGAACCTCCATGGCAATCAGGTTCAATCCATTGTTGTCAGTCTTTATGCTGCTGATCAGCTTATAAAGCGCTGGGTTTTTATTTTTGATCTCGCTCACTGAGTTTGAGTTTTCTATGAGCGTCTGAGCCAGTCTGATGGAGTCCTTCGGTGGAATATGGCTCGTGTTGAGTGTTCCTTTGTTGTTCTCACTGGACCTCCGAGCACTTTGAACACTTTTATATTCACCAACAAATCCAAGATGGTACATTTTGATTAGGATACGTTCATCACTTCTGATGAATTTAACACTCTGTAAGTATTCCTGCAGTGCAACGTCTGTCTCCTTTCTACTTCCTCCAGTTATGCTGTATTTTCTGGGGTTTTGGTGACAGAAGTCGTATCCTCTCTGGAGAATAAGCAGGGGTGTGTACGAATCAAGGTTCGTCTGGATCTCATTTTTCACTTTGTTGCGTAGCATCAATGCTTCCTCCATCTTGCTGCCAGTTGCTTGTGCTACAGCATGATAAAGAGCATTCTGATGATCCGAGTTAACGCTGATTATCTTGCCATCATCCTGGACAATGTCAAAATGGCCGTTGTACAACTGTGCATCAGCTCTGTTTTTAAAATAAAAAGTAACTACATTCAGTACACAAAGGTTATAAACATTAAAGGGGACCTATTATGCAAAATTCACTTTTGCATGGTGTTTGGACATAAATGTGTGTTGGCAGTGTGTGTACACAACCACCCTATAATGATAAAAATCCAACCACTCCTTTTTTTAATCCCCATAAATCATAAGCAGTGTCTCAGAACAAGCCGTTTCCAGATCCCTGGCAGTGTGACGTCACATTAGCCACAGGCCCCGCCCATGAATGTTGACAGACATAGAACCATTGACCGTTTGAACATAGAACCGCCCTGAGCGAGTTCACAATTCTCAGTTCCTCAATTCTTCCTCAATTCTACTGAAATTCGTTTATATCTGTGCAAATCATTTCACACTGGACTGTTGTGAAATGTTCATGTTCATGTCAATACAAAGGGACAATACAAAACAGAGATTGTGATAAAAATTTGTTACTCAAGGACAGATCAGTAAACTGTTCCTGATCCAGCTTACAGCCTCCAGAGTGATACTGGATACGGCAGTAAAGAAGGTGAGAGCACTTTATTACAGTTCATCAGAGTTTATTTACGAATATAAAGTTTACCAGTTTATTAAACACTACCTGAAAAGGCATAAGGTCTTTATATATTTGTTTACTGTTAGTTGTAACGAGTGTTTCTGTGTACTTCACTGTGTATGTTGATGATAATGCAAGAGAGAGAGAGAGAGTTTATGGATAATATTTTAATGCACACTTGCACTGTGTTTTATTAAGCTCTTACCGTGATTTTCTAGAGTGAAAACGTGTGCTTCATCTTTTGTGTGAAGTACAATAAACGTCATAAAACTCATTAAGTAAAGTCGAACAGGGTCCGGTACAACAGGCATATATTAATATAGTGGATAAAAACAAGACGACAATATAAGTTATAACCGTAATTGAACTAAACTATACTTGTTCTATCTCCATTCAGCATATATTTGCAGCTTCTGTCATTATAGTGCGTCCTGACTGAATCCTGAAACCGGAGAATCAGCTCTTGAAGCTCCGCCCTTTTAGGCAGAGCACAGCAGGTCATTTGCATTTAAAGGGACCACACTGAAACGGTGTGTTTTTGCTTAACCCCAAAAAGTGGCAATTTTAACATGCTGTAAAAAATGATCTGTGGGGTATTTTGAGCTAGACTTCACATATACACTCTGGGGACATCAGAGACTTATTTTACATCTTGTAAAATGGGGCATAATAGGTCCCCTTCAACACTAAAATGTATTTCTACACATAAGCAGTGTAATGCTCTAGTGATTAGTCTTACTGTGATGTATGAGGGGCTTTTGCAGATTTGGTTACTCTCAGTTTTATATCGCCTGCTGATTTGGTGGTTCCTGGGTAACGTTCCTCAGTGAGCTGTTTTCCATTTTCATCAACGACAGTGAGTTGAATCCCTTTTCCATCGAGCAGGTTACTTTTTGTGAGCACATATACATCGAGGGCTGTAACAGGATGATCAGTTTTGCTCATATCTTCTGTATACTGCATTAGTTTTGTTTTGTCCTCATCTGACAGCTGTTCCACTTCCTTGTGGCTTGCAGATTTCTTGTTGTGTTTTCCTCTTTGGTCATCAAAGAAACGCTGAGTCTTATGTCTGCGCATGACTTTGTCTACTGCCTGTTCTGCAGCACTGTTCAACTCTTTCTTAAATGTGCTGGTCATTAAAGAAGTTATATGTTCAGAACAGGAACTGATGAATTGCTCAGAAACTTTCTCTGCGATATCCTTTAGAAGGTCTCTTTTAAGGCGTTGTACATCCTGTAAACTGTGTCGTCCATCTTGGTCATACTTTGTCATTTCTTTCTCAAGCTCACTGATCCTCTCCAGTAAATCAGGAACAAATTTCTGTTGTATTATCTCCTTTGTGGGTATGGCACCCAATATTTGAGAGAGACTTGTTGAGTACTCAGATACTTTCAGGGCCAGCTTTGCCATTTCAAGCACACCTGACAGTTTTGCTTTATTCATAATCTCTGTTGCTGCTTTACACACATCAGAAAGTTTGCTGATAACGTCCTGTGCTGTGGTACAGTCCAGTATGAGGTGAGGAGTTATCTCTTCACAGAACATATCAAATGTTTTTTTTATTTGTTTCTCATAATTCTGGTCAATCTTGAAATTCTCTTTTTCCAAGGCAGCTTTCGGAATGCCTGAGCTGATAAATTCGACAAGATTCTGATCCAGGTCACTGCTTTGCTTCACTGATGAAGTAATGACATTCTGAAAACTGCTTTGTAAAATCTTCTTAAAGACTTCCTGAAGTGCTGCATCGATTGTGTAGTTCATGACAGTGAGCACAGACTTTTTCCCGATTTCCTGAACTGCATATTTAGTCGCAGCTTTTAAGTTCTGTCTGACCACTGTTGAAGATGTCGTGTTTTTCATTGCAGACTGAAAAGATTCTTTACCAAGTGATGATAAACCAGACTGAACGCCTCCTTTAAATGAAGTAAACATTGCCTTTCCTGATTTGATGAATTCATTTGCAACAGAAGAGAAAGACTTTGTACCATTGAGAAGACTTTTTGTCACTTTAAACACTGTGGTAACTGCTTTCTTGATAATGCTAAAGCCAGCTGTTAGCAAAGAAAGCCCGATGCTGATACTCTTAGATATTGCCCATGACGCCCAATCAAATGTGCCCTTTATCATCCCGTCTATTCCATTGATCATGTCAGACACTCCTTCTGCAATCAGGCCCATTCCGAACTGGCTTGCTGTTCCAAGTGTCAGGGCACAAACAAGAACCCCAGCAAGAACCTGTACCACCCCGAGAAAGAAACATATCAAAGCATCAAAGCAAAATTTGGGCTTGTTTTTCACCTCAAAAACAATACCGAGGCCATAGTCGTATAACGATCTCAGCTCATTAGTGATGATGAAGTTCTTTTCTTCAGACAGCATGTAGACTGAACAGTCTTCTGTAGTGGCTTTGCTGTTGTTTTTCTCCACCTCTTTAAGTTTATTCAATGCATTATCAATGTACGTCATCCAAGACTTAAAGATATTCATTCTGGCCTCCATTTGACTCTGAAAGTTGTTATTGTCTGTACTCTGATCTTTGTTACCAGTGACTGATAAGTTACATGAGACCATTGTGTTTGAGACTTCTGAGACGTAGACGCCAATTGATTTCTTTGCATCTTCCAGCAGTTTCATAGCGTCTGCTTTATAGTTACTCTTACCAAGGTTGATGGTGATGTACGCCTGGTTATAGAGTGCCACAGCCTGGAAGTGTGGGTCAGAGTTAACAACTTTTTGCCAATAGGATTTGGCTCCAAAGGCATTGTTGGATTTGTCGCGGCAGTGTAGATCAGTTCTTACAATTGCCTGTTTGACATGATCGTAGAAATTATCGCATTCTCCTCGCAGCAGCTTTCCACTTGTTTCATTTACTGTCCTGATAAGGTCTGCTTCAAGTTCTCCTAAGTCATCATGTCTATTGATGTGATCCTCGTGAAGGGTCAACCACAAGGCCCAAGATTCTTTCAGAGCATTGATGGCAGGCTGATAATCAAACTTAAGCTGATGATGTTTAAAGCATTCAGGAATATTTTTAAGCTGCATTCGCATGGGGTCCAGTTTTTCTTCCTGAGTGTAATGCTTATCAAAGTCCTTCAGCAATTTACAAAATGTGGAGAACAGATTTTCCTTTAGGTTTATTTCAACCAGCTCATCACTTTCCATGTCGTGGATTCGTTTAATTTCATAGTCCTCTCTTAGCTGGCGCATAATTTCCACAGACTGACCTTGGTAAGCTGGTGCGAGATGATCACAGTTCACAACCATCTGGACCATCCCAGGATTGCCTTTTCGAGATGTACGACCAAATATTTGTTTCTCGACTCTTCGGTTTTGAGGAAAGTGAGTAAGAAGAACAAAAAGACCACCACACTTATTCACACTTTCATCAACCTTTATGTCTGTCCCCCGACCTCCGAGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596543 lncRNA upstream 1208 56322 ~ 74905 (+) False G520020
TU596511 lncRNA upstream 24705 20274 ~ 51408 (+) True G520005
TU596510 lncRNA upstream 25276 20274 ~ 50837 (+) False G520005
TU596508 lncRNA upstream 25683 20274 ~ 50430 (+) False G520005
TU596514 lncRNA downstream 119536 235284 ~ 236338 (+) True G520008
TU596605 lncRNA downstream 132693 248441 ~ 251073 (+) True G520068
TU596500 lncRNA downstream 139364 255112 ~ 260688 (+) True G520004
TU596626 lncRNA downstream 218153 333901 ~ 334264 (+) True G520089
TU596794 lncRNA downstream 258829 374577 ~ 374830 (+) True G520206
CI01000364_00151094_00203772.mRNA mRNA downstream 35070 150818 ~ 203857 (+) False CI01000364_00151094_00203772
CI01000364_00263052_00264410.mRNA mRNA downstream 147237 262985 ~ 264747 (+) True CI01000364_00263052_00264410
CI01000364_00287825_00289294.mRNA mRNA downstream 171299 287047 ~ 291072 (+) True CI01000364_00287825_00289294
CI01000364_00294611_00295771.mRNA mRNA downstream 178653 294401 ~ 295950 (+) True CI01000364_00294611_00295771
CI01000364_00382475_00385399.mRNA mRNA downstream 266727 382475 ~ 386117 (+) True CI01000364_00382475_00385399
TU596513 other upstream 30267 44426 ~ 45846 (+) True G520007
TU596492 other upstream 43134 31744 ~ 32979 (+) False G520002
TU596480 other downstream 64599 180347 ~ 182853 (+) True G520001
TU596517 other downstream 125573 241321 ~ 324231 (+) True G520009
TU596524 other downstream 134552 250300 ~ 255006 (+) True G520012
TU596526 other downstream 193620 309368 ~ 337107 (+) True G520013

Expression Profile