RNA id: TCONS_00022149


Basic Information

Item Value
RNA id TCONS_00022149
length 407
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_010630
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21079589 ~ 21083019 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGCCGCCGCCTGCTCTGGTTGGCCAACACAACGGGCAAATGGAAAgactttacaaacaaacaaacagacgaTCGACATGGACAACAAACAGGACaaaataatgtatgtatgtgtaagaCCGGTAATGGAGTTATGCTGTGGAAAATGCGTTATGGAAGACTGTCTAGGAGCTATCGGATCTGTGTGTGCACCCACATTGCCAACAGCAGGATAACAGAACAGCTTGTGAAGCCTGAGGGTGAAAGGACTGAAAACAGAGCTTGGCCCTGATTGCTTCTAACACACCGATTTGGGGTTCAAAGCGCACAGCTGTGAGAGAGAAACAGAGCCCTGAGCCTGCAAGGTCAACAGACAGAGGACGAGGGGCTGAGGCACGAAACGATCCATGCCGAGACAACCAGCAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020817 lncRNA downstream 35459 21040326 ~ 21044130 (-) True XLOC_010629
TCONS_00020813 lncRNA downstream 144082 20931585 ~ 20935507 (-) False XLOC_010625
TCONS_00022148 lncRNA downstream 144556 20931585 ~ 20935033 (-) False XLOC_010625
TCONS_00020812 lncRNA downstream 144852 20931585 ~ 20934737 (-) False XLOC_010625
TCONS_00020820 lncRNA upstream 61650 21144669 ~ 21146623 (-) False XLOC_010632
TCONS_00022151 lncRNA upstream 135323 21218342 ~ 21224878 (-) False XLOC_010633
TCONS_00022152 lncRNA upstream 136476 21219495 ~ 21224878 (-) True XLOC_010633
TCONS_00020828 lncRNA upstream 372919 21455938 ~ 21461675 (-) False XLOC_010634
TCONS_00022153 lncRNA upstream 455828 21538847 ~ 21539729 (-) True XLOC_010636
TCONS_00020815 mRNA downstream 31717 21038520 ~ 21047872 (-) False XLOC_010629
TCONS_00020816 mRNA downstream 32106 21040254 ~ 21047483 (-) False XLOC_010629
TCONS_00020814 mRNA downstream 41574 21033633 ~ 21038015 (-) True XLOC_010628
TCONS_00020806 mRNA downstream 146693 20805322 ~ 20932896 (-) False XLOC_010625
TCONS_00020807 mRNA downstream 209384 20805933 ~ 20870205 (-) False XLOC_010625
TCONS_00020818 mRNA upstream 47996 21131015 ~ 21140097 (-) False XLOC_010631
TCONS_00020819 mRNA upstream 48037 21131056 ~ 21140098 (-) True XLOC_010631
TCONS_00020821 mRNA upstream 61651 21144670 ~ 21185778 (-) False XLOC_010632
TCONS_00020822 mRNA upstream 61903 21144922 ~ 21181128 (-) True XLOC_010632
TCONS_00020823 mRNA upstream 359343 21442362 ~ 21489562 (-) False XLOC_010634
TCONS_00020809 other downstream 184414 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020803 other downstream 586893 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020802 other downstream 685780 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020793 other downstream 1109222 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020792 other downstream 1196642 19876270 ~ 19882947 (-) False XLOC_010616
TCONS_00020827 other upstream 368136 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020829 other upstream 372935 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020844 other upstream 724403 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020846 other upstream 739715 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020856 other upstream 829896 21912915 ~ 21917325 (-) False XLOC_010651

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU112131 True 2389 lncRNA 0.39 3 CI01000016 8394918 ~ 8403030 (-)