RNA id: TU596555


Basic Information

Item Value
RNA id TU596555
length 773
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G520022
representative True

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 73076 ~ 106997 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTAGCGAAGGGTACATGCGATGGTCACTTTGAGGAAGTAATTTTATTATTTATGATCATGTGACCCAGCGAATACTTGTGATTCATTTTAAAGCTAGATGGCGGGAGAGTTTGAGTTAAATTAAGCATTAATGAAATATGCAAATATAACTAAACAAAAGCAGAAAGCATAAATCCATCAGGTTGAGACTTTTAAACAATTATGTTAGAGATTTTCTTGTTCATGAAGCTGTTTTACTTGGATATACGTCACGATAGGGAGGAAAAGACTCGCAACAATTAAGCCAGCTTTAACTTTGTTCATACAATGTGTAGAGGCTTTACAGCGAATGAGAGAACAGTGTTAGTTTTGCCATCTCAATATTAGTGTTGGATGGCTTTGCCTTAGTTCTGCCCAGCCGAGGTCTTTTAGCAGTGTCATCACGCATTGTGGATTCTGAGCTTTCCCCTTCCAATGTGATAACGACTGGGCTGCTTGGAGACTGAGTATAAGTTGCAGAAGACATTTCGGATCATTGATCGAAATCGGCTTATAATCGTATGAAAACCACACAGTGTATGCCTGGATTAAGCCCCTTCATGAAGAATGCCAAGGTGTTCTGCAGGAAAATGACAGAGGTTTGTCTGTTTTGTACAGTGTACAGCTGAATGGTCACTTCAATGCAGTGATTGCCTACTTAAATGGTCAGGGTGTATGATGGTAGTATGATGCTTCTATCATGTTAGGACACTGGTGCTGTAAAATGTGTATCAGGGAAATTGATGAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596511 lncRNA upstream 21668 20274 ~ 51408 (+) True G520005
TU596510 lncRNA upstream 22239 20274 ~ 50837 (+) False G520005
TU596508 lncRNA upstream 22646 20274 ~ 50430 (+) False G520005
TU596514 lncRNA downstream 128287 235284 ~ 236338 (+) True G520008
TU596605 lncRNA downstream 141444 248441 ~ 251073 (+) True G520068
TU596500 lncRNA downstream 148115 255112 ~ 260688 (+) True G520004
TU596626 lncRNA downstream 226904 333901 ~ 334264 (+) True G520089
TU596794 lncRNA downstream 267580 374577 ~ 374830 (+) True G520206
CI01000364_00151094_00203772.mRNA mRNA downstream 43821 150818 ~ 203857 (+) False CI01000364_00151094_00203772
CI01000364_00263052_00264410.mRNA mRNA downstream 155988 262985 ~ 264747 (+) True CI01000364_00263052_00264410
CI01000364_00287825_00289294.mRNA mRNA downstream 180050 287047 ~ 291072 (+) True CI01000364_00287825_00289294
CI01000364_00294611_00295771.mRNA mRNA downstream 187404 294401 ~ 295950 (+) True CI01000364_00294611_00295771
CI01000364_00382475_00385399.mRNA mRNA downstream 275478 382475 ~ 386117 (+) True CI01000364_00382475_00385399
TU596513 other upstream 27230 44426 ~ 45846 (+) True G520007
TU596492 other upstream 40097 31744 ~ 32979 (+) False G520002
TU596480 other downstream 73350 180347 ~ 182853 (+) True G520001
TU596517 other downstream 134324 241321 ~ 324231 (+) True G520009
TU596524 other downstream 143303 250300 ~ 255006 (+) True G520012
TU596526 other downstream 202371 309368 ~ 337107 (+) True G520013

Expression Profile