RNA id: TU596676


Basic Information

Item Value
RNA id TU596676
length 398
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G520105
representative True

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 190609 ~ 202322 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGAGTGCCTTGCTCAATGGACACAGGAGTGAGTTTTGAACAGGTAGAAAGGGTAGGAGCTGAAGGCAGGGCAGAACTTAGGGAGGAAGACACAGGACTGGACTGAGAGGAGATGAAATCAGGATGAGTCAGGTGGGACAGAGGAGGAACAACGGGTAAAGACACAGGAGGGGTCGGGGAGGTGGTGCAGGAAACATCACGTGTCTGGGTGGAATGGAAAGATGAGGGCACAGGAGAAGCCGAGGAGGATGGCATGGGAGTAAGAGTCTCAGACTCAGGGGTGAGCAGAGGTTTAGACTCTGATGCTGGGTCTGAAGGGCAGACATTTTCTAATGGTGTAATCTCTGTCTGTGTGATGTTTGTTGCTGGAGTCTTGCCAATGCTACTCGCTGGTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596723 lncRNA downstream 39940 148351 ~ 150669 (-) True G520143
TU596646 lncRNA downstream 51314 138455 ~ 139295 (-) False G520098
TU596708 lncRNA downstream 119236 70819 ~ 71373 (-) True G520128
TU596658 lncRNA downstream 139200 20310 ~ 51409 (-) False G520100
TU596660 lncRNA downstream 139762 20310 ~ 50847 (-) False G520100
TU596650 lncRNA upstream 15845 218167 ~ 221553 (-) True G520098
TU596746 lncRNA upstream 21986 224308 ~ 225359 (-) True G520159
TU596680 lncRNA upstream 29732 232054 ~ 309930 (-) True G520107
TU596683 lncRNA upstream 47802 250124 ~ 270586 (-) False G520108
TU596684 lncRNA upstream 48020 250342 ~ 270586 (-) True G520108
CI01000364_00110528_00118790.mRNA mRNA downstream 71819 110429 ~ 118790 (-) True CI01000364_00110528_00118790
CI01000364_00081223_00107594.mRNA mRNA downstream 82816 81180 ~ 107793 (-) True CI01000364_00081223_00107594
CI01000364_00037534_00041491.mRNA mRNA downstream 146890 36674 ~ 43719 (-) True CI01000364_00037534_00041491
CI01000364_00002233_00008090.mRNA mRNA downstream 182401 2233 ~ 8208 (-) True CI01000364_00002233_00008090
CI01000364_00373309_00374559.mRNA mRNA upstream 170987 373309 ~ 374559 (-) True CI01000364_00373309_00374559
CI01000364_00391142_00398789.mRNA mRNA upstream 188629 390951 ~ 398930 (-) True CI01000364_00391142_00398789
CI01000364_00455879_00458332.mRNA mRNA upstream 253557 455879 ~ 458332 (-) True CI01000364_00455879_00458332
TU596682 other upstream 48020 250342 ~ 270995 (-) False G520108
TU596843 other upstream 248711 451033 ~ 451562 (-) False G520248
TU596844 other upstream 248711 451033 ~ 451562 (-) False G520248

Expression Profile