Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU596514 |
| length | 819 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G520008 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000364 |
| NCBI id | null |
| chromosome length | 520240 |
| location | 235284 ~ 236338 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU596541 | lncRNA | upstream | 115607 | 76113 ~ 119677 (+) | False | G520020 |
| TU596539 | lncRNA | upstream | 119536 | 76113 ~ 115748 (+) | False | G520020 |
| TU596536 | lncRNA | upstream | 123646 | 76113 ~ 111638 (+) | False | G520020 |
| TU596542 | lncRNA | upstream | 123646 | 76113 ~ 111638 (+) | False | G520020 |
| TU596547 | lncRNA | upstream | 123646 | 76113 ~ 111638 (+) | True | G520020 |
| TU596605 | lncRNA | downstream | 12103 | 248441 ~ 251073 (+) | True | G520068 |
| TU596500 | lncRNA | downstream | 18774 | 255112 ~ 260688 (+) | True | G520004 |
| TU596626 | lncRNA | downstream | 97563 | 333901 ~ 334264 (+) | True | G520089 |
| TU596794 | lncRNA | downstream | 138239 | 374577 ~ 374830 (+) | True | G520206 |
| TU596797 | lncRNA | downstream | 139359 | 375697 ~ 376328 (+) | True | G520207 |
| CI01000364_00151094_00203772.mRNA | mRNA | upstream | 31427 | 150818 ~ 203857 (+) | False | CI01000364_00151094_00203772 |
| CI01000364_00263052_00264410.mRNA | mRNA | downstream | 26647 | 262985 ~ 264747 (+) | True | CI01000364_00263052_00264410 |
| CI01000364_00287825_00289294.mRNA | mRNA | downstream | 50709 | 287047 ~ 291072 (+) | True | CI01000364_00287825_00289294 |
| CI01000364_00294611_00295771.mRNA | mRNA | downstream | 58063 | 294401 ~ 295950 (+) | True | CI01000364_00294611_00295771 |
| CI01000364_00382475_00385399.mRNA | mRNA | downstream | 146137 | 382475 ~ 386117 (+) | True | CI01000364_00382475_00385399 |
| CI01000364_00400175_00427556.mRNA | mRNA | downstream | 163036 | 399374 ~ 427576 (+) | False | CI01000364_00400175_00427556 |
| TU596480 | other | upstream | 50241 | 180347 ~ 182853 (+) | True | G520001 |
| TU596513 | other | upstream | 189438 | 44426 ~ 45846 (+) | True | G520007 |
| TU596492 | other | upstream | 202305 | 31744 ~ 32979 (+) | False | G520002 |
| TU596517 | other | downstream | 4983 | 241321 ~ 324231 (+) | True | G520009 |
| TU596524 | other | downstream | 13962 | 250300 ~ 255006 (+) | True | G520012 |
| TU596526 | other | downstream | 73030 | 309368 ~ 337107 (+) | True | G520013 |
