RNA id: TU596500


Basic Information

Item Value
RNA id TU596500
length 3049
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G520004
representative True

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 255112 ~ 260688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAGATGCTGAGCTGGAGCAGCTTTCACACGCACAGGATCACATCCATTTCCTGCAGGGTTTCCAGTCTCTCTCAGCTCCTCCTGAATCTACAGACGTAAATGACGATCCCTTCAGTTCTCTCTCCTCTTTTGATGGCGTGAGAGAATCTGTCCATCAGCTGAAAGACAAACTGGAGGATTTCTGCAAAGAGGAGCTCAAGAAGATCTCTGACAGAGCCACTTTCACCAACATTGTTCCCAGGACCAGGAACGACTTCCTACAATATTCCCATCAGCTCACTCTGGATCTGAACACAGCACATAAACGCCTCCGTCTGTCTGAGAGGAACAGAGTGATTACTTACACTAACACAGAGCAGCCGTATCCTGATCATCTAGACAGATTTGATATTTTGTGGCAGGTGTTGTGTAGAGAGAGTGTGTGTGGACGCTGTTACTGGGAGATTGAGTGGAGTGGTGTTATGTTTGGTGTGTTTATATCAGTGTCATATAAGAGCATCAGCAGGAAGGGACGGGGTAATGAGTGTTGGTTTGGATATAATGATCAGTCCTGGAGTTTGAGGTGCTCTTCCTCCAGTTACTCATTCATACACAATAAGATAGAGACTAAACTCCCTGTAAAGCCCATCATCAGCAGTAGAATAGGAGTGTATGTGGATCACAGTGCAGGAACTCTGTCCTTCTACAGCGTCTCTGGAGACACAATGAGCCTCATCCACACAGTCCAGACCACATTCACTCAACCGCTCTATCCTGGGTTTTATGTCGGTTATACTGGATCATCAGTGAAACTGTGTTGATGAATCAGAATAGACTGTAGAGAGATTCTACCCATAATGCTTTGAGTTCATGATAAATCAGTAACAGTAAGATGTTGTAGAGTCTCTTACTTTCTCTTCATTACATGACAGTTTTTCTCAATCGATTTGACATTTCTCCAAAGTAATGTAACTGCTCTCAAAACAGTTAACACAGTGATCTAAACACACTCTTACCCCAGCCAAACAGTTCAACTTTAATGCAAAATAAAGCACTGCATTTTTTTCTAGTAATGCATTTATTAAGTAAATACTACAGGTGTATTGTCTATTGATTTTAGAACATTTTCAGCTGTGGATGTACAAATACACTAATGAAAATACATGTTTATTGTAATGTTTGTCCAACAGGTTTTGTTATATGGGTCATTGACAAAGCTTCAAAAAAGGTATTTTTAAAAAATCTTTTCAAAACTGATGAAATGCACATTTTTGAGTCTTGAACAATGTGTTTAAACAGGTTACATAACATTTCAAAGTGTTTAAATTCTTTTTTTTTTTTTACTTTTTCGTCAGGCGGTACAACCAAATGTTTGTAAATATATATTATATTATTGTACGACCTGACATGGAAACATAGGTGTACCAACCTACCCATACTTGAAATTAGCCGTTTTATCAGTATTTGAGAGAGATCTACAAACCTTTTCACTCTGCCACAATGATCTGTTGATTTCCTCTGGATGTCGCATTATCAGACTTAATGGTATTATCTTGTCAATTCATATAAAACAGCTATATTTGCAGTTGTGCCACTCTGGCTGAATCCACAATTCCTCCTATACCCTGCTTTCCACTACACCAATGCCCTCCACCAATCTCTTATCCTCTCCTCCTTTTTTACATCCTCCTCTCTCCTCATATGACCTCCCTCTATCTGTTCCTTTCCTTCTTATTACACCCCTTCCGCTACCCACACCACCTTTACACTTAACACTTATTTCTTTATTTTCCCCTTCTCTTGCATATTCTTATATTCATATTCTTTTCTTGCTCTATGAATACTTTCCCTTTTATACTTTCCCTGTTACATTGCGCAGTTGTGATAAATGTGTAAACAGATAGGAAAACTGAATTTCCTGTGTTGTGTGTATTATTAACAAAGCAGTTATCAGTTTGGGGCCAATTGAAAACATACAAAGTGCATTTGATAATATGACAAATTCCAGAGTTTTGTTTATTGTGTTTGGACAAATAGTACATAAATGTTTGTGAATTGTGTAAAGCCAATTTTAAAAAAAAACTGCGATCATTTTTGATTGGATGTATTATGAAAACATTGGAGAACTTTGTGCGTAGTGTTTTGAGAAAATGATTCACATGATTTGCAATTTGTGTGAAATGAATGAAAACGTACAATATGTTCAGGACAGTTACAATGTGTTCAGATCACTGTGTTAACCTTTGAGAACAGTTATCCAAGTTTGGAGAAATGTGTCAAATCTATTGGGAAAAACTAATACTACAGCTGAACTTCTGTCAGTGAAATAACATGTCAGAATAAATGTGTGTAATGAATCCTCATATAGACAGTAAGATCAGTGTGTGTTTGTGAGTCATGATGAGTGACGGTGTGTATCTGTGCTTTACTCAAGCTCTGTGATTTTCCATCTAACAGAACTGCTTGCTATAATACAGGAAAAATATAAATTATGTTATGAAGGGTAAAATGAGTGTTGCACAATGTATTTTTTATATTTATGCATGTGTTCACATGGAACTGCTGTGTATTCTTTTTGTGTGGATTGTGGCGTTTTTCTTTCTTTTCCAAGCAGTATTCCCTAAGCCACACCTCTATTCTTCTAATTACATCAATTGAACTAATTGGTGATGGACGTTGAGTTGGCGCGTAAATATGTTCTCTTATAAAAGGACAGCTGTGACTGGGACACAAGAGAGCAAGTACCACGGTGGAAAGGGTAAAGGGGCAACACCATGCGGTCGTATCCGGAAACTGGTCGACGAGAGAACGAGCGAGAGAGTCACGTTTGCGTCGGCATCTAGCAGTGAGTGTGTTGCATGTGGTAAGACGGCCTATGGCCATGTGAGTGCACAGCTTTCTGTAGACGAATAAAGGCGGATGAGCTGGCGGTTCGGTGACGCAGATGCCTATCAGAGGCTGAACTGAAGCTGGACTGTCTACCGAGTTTGGACTTTTAATGTTTGTTTTCTTTCTTTTTTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596605 lncRNA upstream 4039 248441 ~ 251073 (+) True G520068
TU596514 lncRNA upstream 18774 235284 ~ 236338 (+) True G520008
TU596541 lncRNA upstream 135435 76113 ~ 119677 (+) False G520020
TU596539 lncRNA upstream 139364 76113 ~ 115748 (+) False G520020
TU596626 lncRNA downstream 73213 333901 ~ 334264 (+) True G520089
TU596794 lncRNA downstream 113889 374577 ~ 374830 (+) True G520206
TU596797 lncRNA downstream 115009 375697 ~ 376328 (+) True G520207
TU596799 lncRNA downstream 116013 376701 ~ 376969 (+) True G520208
TU596812 lncRNA downstream 164047 424735 ~ 425063 (+) True CI01000364_00400175_00427556
CI01000364_00151094_00203772.mRNA mRNA upstream 51255 150818 ~ 203857 (+) False CI01000364_00151094_00203772
CI01000364_00263052_00264410.mRNA mRNA downstream 2297 262985 ~ 264747 (+) True CI01000364_00263052_00264410
CI01000364_00287825_00289294.mRNA mRNA downstream 26359 287047 ~ 291072 (+) True CI01000364_00287825_00289294
CI01000364_00294611_00295771.mRNA mRNA downstream 33713 294401 ~ 295950 (+) True CI01000364_00294611_00295771
CI01000364_00382475_00385399.mRNA mRNA downstream 121787 382475 ~ 386117 (+) True CI01000364_00382475_00385399
CI01000364_00400175_00427556.mRNA mRNA downstream 138686 399374 ~ 427576 (+) False CI01000364_00400175_00427556
TU596524 other upstream 106 250300 ~ 255006 (+) True G520012
TU596480 other upstream 70069 180347 ~ 182853 (+) True G520001
TU596513 other upstream 209266 44426 ~ 45846 (+) True G520007
TU596492 other upstream 222133 31744 ~ 32979 (+) False G520002
TU596526 other downstream 48680 309368 ~ 337107 (+) True G520013

Expression Profile