RNA id: TU596653


Basic Information

Item Value
RNA id TU596653
length 1512
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G520099
representative True

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 263008 ~ 264764 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATTCTCTTATTTATTTCTGTAGGATGAAGAGATACAGATCAAGGATCAGTAACAAGATACACTTAAAAAGGTATTATTTAATATTATTAGATTTAATACTTCAACAAAACACTTTTGAGTCACATGTGATATTCATGGATCCTGTCTGTCTCAGTGCTGAAACTCTTTATACAAACGTACATGTATAGACAGATCAGAACTTATGAATATAGTGTATTATACTGACTTTTATACAGTAATCTATTGAACATTTCAAACACACATTAGTCCTCATTAATACAGGTTTATATGTTAATGATTCTTCATGATTTTCATCATAAATCATACAGTGACAGTTCTGAATTATTGGAATCACATTCTGTAAAGATCATCTTCTCTTAAGGGAAACAGTAGGAAACCACTGAATGTGCAGTGATTATTCTGGTTATCAAATATCCTCCTGTTAGACCAAAGTCTCACATAGACAACATCTCCAACCTCCAGGATCAACACAACTCCATTTGAGGAGTTTAACCCACCCTGAGAATGATAATCATCTGCTGAAACCACCAGCTTTCCATTCTTATAAATGGATACAGCTGCTGATGGTGGGGCATGACTATATACAGAGACTCTGAACATGTACGCTCCTTTCAGTGGGGCTGTGAAATACCTGTAATTGGGTTGTAGGCGTTCCCTATGTTTGTGAAGACGTTCCTGTAGGTTAGTGTGATTTCAGTGGTAAAAGGACCAATAAATCCACTGCCAGATTGCACCAGTGAAGCTGAAAAAGCTATTTCTCTGTCTGTTATTGAAAAACATAAGCAATATTGTGATATATTACTGTATTACACTGAGAATGTATACACTGAATTTAACATCATTCAAGCACACTTTCACCTCTATTTTCCTTTCTCAACTCCACTTGACTCAGAGTAAGATTTGAAATTTCTGTGAAGGAATAAAGATTCTGTTAAATGACATTTACACTGATTATTGTAATAGATAACACAATTTACACAGTATACACTCAACTTTACACTAACATTTATACTATACAATGTATTGCATTGGTGTTTTACTTTGAGGATCCTTGATAAAAGAGTGAATGTTTTGGTGAAGTACCATCATTTTTCTTGTTCATCTCATCCCTCAGTTCTGTAACGGTGGCGGTCAGTTCTCTGATGTTTCCTTTCTGCTCTGTAACGGTGGCGGTCAGTTCTCTGTTCTTTTCTTTCTGCTCTGTAACGGTGGCGGTCAGTTCTCTGATTGCTGCATGGATGTCAGGGATGCCCAGATTGCAGTATTGTTGGCTGTCCGTTGAAGCTTCAGCTCTCAAAGTGTCTGTTTGAGGTGGATTCTGTCTTCCGTCCTCAGAGCTGATCTGTTGACTGATCTCATTCTCATCGAGTCCTCCATCTACCTGCTGCTGGACGACAAACACAAAGGTTTCCAACAGCAGCAGTATACATACTAAAGCCTTCATTCTTCACTGATGTTTGTTTCCAGCTCTTGCTCTGTCATCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596746 lncRNA downstream 37649 224308 ~ 225359 (-) True G520159
TU596650 lncRNA downstream 41455 218167 ~ 221553 (-) True G520098
TU596674 lncRNA downstream 60686 190609 ~ 202322 (-) False G520105
TU596676 lncRNA downstream 60686 190609 ~ 202322 (-) True G520105
TU596727 lncRNA downstream 65760 180328 ~ 197248 (-) True G520146
TU596664 lncRNA upstream 20090 284854 ~ 318572 (-) False G520100
TU596663 lncRNA upstream 20427 285191 ~ 318572 (-) True G520100
TU596813 lncRNA upstream 159959 424723 ~ 425045 (-) True G520221
TU596830 lncRNA upstream 176639 441403 ~ 441651 (-) True G520238
TU596845 lncRNA upstream 186433 451197 ~ 451562 (-) True G520248
CI01000364_00110528_00118790.mRNA mRNA downstream 144218 110429 ~ 118790 (-) True CI01000364_00110528_00118790
CI01000364_00081223_00107594.mRNA mRNA downstream 155215 81180 ~ 107793 (-) True CI01000364_00081223_00107594
CI01000364_00037534_00041491.mRNA mRNA downstream 219289 36674 ~ 43719 (-) True CI01000364_00037534_00041491
CI01000364_00002233_00008090.mRNA mRNA downstream 254800 2233 ~ 8208 (-) True CI01000364_00002233_00008090
CI01000364_00373309_00374559.mRNA mRNA upstream 108545 373309 ~ 374559 (-) True CI01000364_00373309_00374559
CI01000364_00391142_00398789.mRNA mRNA upstream 126187 390951 ~ 398930 (-) True CI01000364_00391142_00398789
CI01000364_00455879_00458332.mRNA mRNA upstream 191115 455879 ~ 458332 (-) True CI01000364_00455879_00458332
TU596843 other upstream 186269 451033 ~ 451562 (-) False G520248
TU596844 other upstream 186269 451033 ~ 451562 (-) False G520248

Expression Profile