RNA id: TU596856


Basic Information

Item Value
RNA id TU596856
length 773
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G520258
representative True

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 462572 ~ 463344 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAGAATCGGGACAGGACTCAGGCAGAAATCATGTTCATGGATGAGATTATTAACGTTACTGTAAGCAGAGCATGGCCGAGTGCTGTGGGAGCAGTAACGAGGCCGCTGGAGCGATTGCTAATGAGAGACGAGCGTGACACACGTCTCAACAGCAGCGGATTTTTTATTATGCCACAGTCGCTGCTTCCGATCCTCCTGGTCATGTGCACGTAGGGTAAAGCAGCAGCACTGTTTATCATATTAGATACATTTGTGTGTTGAAAGTTGTTATAGTGCTACTCTGTGCTTTCGCTCAGTGGCTGCTATGAGACACTTGTTGCACACTGCAGTAAGATAGATCGATATTAGTTATGGTAACACATAGTACTCACTGTAAATCCAGAAAACAAGATTCAAACAAAAAGACTTAGGGCCAGATTTACTAACAGCTTGTGCCAGTTCAAACCCTCTTTTGGCGTTAAAAAACTACTGTCGGGATTTACTAAAGACACGCAGTATAAAATTAGCGCTGAAAAGGCGTGGACTGAGTTGTTTTTGCGGCTGACCTTATTGCATATGCATTTGTAGGAGTTTCCCTTTCAGATGCAAAATTTATGGGAGGAGAGTATTTAGATGAATCACGCAATGCGATTTACTAATATTTGTGCTCGTCAATTTCCTGGTATTTACGCCATTATTTAACGCCCTAAAAAAGCATGTCTTAACCCATTTTGTAACATGGCTGCAATTGTTGCTGTTAGGAGGAGACACCGCAGAAAACAGAGAGCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596855 lncRNA upstream 347 462019 ~ 462225 (+) True G520257
TU596850 lncRNA upstream 5511 456784 ~ 457061 (+) True G520252
TU596836 lncRNA upstream 15795 446461 ~ 446777 (+) True G520244
TU596814 lncRNA upstream 36864 425438 ~ 425708 (+) True G520222
TU596812 lncRNA upstream 37509 424735 ~ 425063 (+) True CI01000364_00400175_00427556
TU596858 lncRNA downstream 401 463745 ~ 464082 (+) True G520260
CI01000364_00458726_00460323.mRNA mRNA upstream 943 458726 ~ 461629 (+) True CI01000364_00458726_00460323
CI01000364_00400175_00427556.mRNA mRNA upstream 34996 399374 ~ 427576 (+) False CI01000364_00400175_00427556
CI01000364_00382475_00385399.mRNA mRNA upstream 76455 382475 ~ 386117 (+) True CI01000364_00382475_00385399
CI01000364_00294611_00295771.mRNA mRNA upstream 166622 294401 ~ 295950 (+) True CI01000364_00294611_00295771
CI01000364_00287825_00289294.mRNA mRNA upstream 171500 287047 ~ 291072 (+) True CI01000364_00287825_00289294
CI01000364_00471523_00472629.mRNA mRNA downstream 8179 471523 ~ 472821 (+) True CI01000364_00471523_00472629
CI01000364_00512592_00513897.mRNA mRNA downstream 48487 511831 ~ 514181 (+) True CI01000364_00512592_00513897
TU596526 other upstream 125465 309368 ~ 337107 (+) True G520013
TU596517 other upstream 138341 241321 ~ 324231 (+) True G520009
TU596524 other upstream 207566 250300 ~ 255006 (+) True G520012
TU596480 other upstream 277529 180347 ~ 182853 (+) True G520001
TU596513 other upstream 416726 44426 ~ 45846 (+) True G520007

Expression Profile