RNA id: TCONS_00020828


Basic Information

Item Value
RNA id TCONS_00020828
length 789
lncRNA type retained_intron
GC content 0.44
exon number 4
gene id XLOC_010634
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21442362 ~ 21489641 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGCatgctaaacaaacagtgacagacaACACCTTTTATTAAaaacctaagaaagcatttaggtcccaccacaTTATATTTCCATCATCATTacattttacagggaagccaaaatgcttttcATACACATGATTTGAATATTGCGGAAAGCATTCTCCCTGTACttgttataaatgttaataaaaaaattgttattaaaaatagttattaatcCGTGGGTCACGTGCATTCCGGACTGTTGGTACTATGCGTAACTTTTTATTCTGATATTCATGGTGTGTTCTGTTTAAGGGTGTAACATTCCGGGTGGAGGAGGGTGACCTTGTCATCGCGCGTGTTTTGCATGGCAGCATGATTGACAGGCAGGGGATGCTCCATGCAGGTGATGTCATCCGAGAGGTGAACGGCCGAGAGGTGGGCAAAGACCCCATGGCATTACAGCACATGCTGAGGGACTGCAATGGAAGCATCACGCTCAAAATCCTCCCCAGCTACAAGGACACACCTCCACCCGCACAGGTGTACCTGAAGCCACATTTCAACTACAATCCTAACACCGATAACCTGATCCCATGTAGGGAGGCGGGTTTGGCTTTCTCCAAAGGAGACATTTTGCATATAGTGAACAAGGAGGACCCCAACTGGTGGCAAGCATGTAACATAAATGGAGGACATACTGGTCTGATCCCCAGTCAGTTTCTGGAGGAGAAGAGGAAAGCATTTGTAAGGAGAGACCTGGATGGATCAGGAATCCTTTGTGGGACactaacaggaaaaaaaaagaaaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-35 Is expressed in cephalic musculature; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human PALS2 (protein associated with LIN7 2, MAGUK family member).

Ensembl:

ensembl_id ENSDART00000150105

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022151 lncRNA downstream 231060 21218342 ~ 21224878 (-) False XLOC_010633
TCONS_00022152 lncRNA downstream 231060 21219495 ~ 21224878 (-) True XLOC_010633
TCONS_00020820 lncRNA downstream 309315 21144669 ~ 21146623 (-) False XLOC_010632
TCONS_00022149 lncRNA downstream 372919 21079589 ~ 21083019 (-) False XLOC_010630
TCONS_00022150 lncRNA downstream 372939 21079856 ~ 21082999 (-) True XLOC_010630
TCONS_00022153 lncRNA upstream 77172 21538847 ~ 21539729 (-) True XLOC_010636
TCONS_00021799 lncRNA upstream 331615 21793290 ~ 21807977 (-) False XLOC_010642
TCONS_00020843 lncRNA upstream 338710 21800385 ~ 21803111 (-) True XLOC_010643
TCONS_00022154 lncRNA upstream 374505 21836180 ~ 21836568 (-) True XLOC_010647
TCONS_00021800 lncRNA upstream 393621 21855296 ~ 21856351 (-) True XLOC_010649
TCONS_00020821 mRNA downstream 270160 21144670 ~ 21185778 (-) False XLOC_010632
TCONS_00020822 mRNA downstream 274810 21144922 ~ 21181128 (-) True XLOC_010632
TCONS_00020819 mRNA downstream 315840 21131056 ~ 21140098 (-) True XLOC_010631
TCONS_00020818 mRNA downstream 315841 21131015 ~ 21140097 (-) False XLOC_010631
TCONS_00020815 mRNA downstream 408066 21038520 ~ 21047872 (-) False XLOC_010629
TCONS_00020831 mRNA upstream 1694 21463369 ~ 21489528 (-) True XLOC_010634
TCONS_00020832 mRNA upstream 30216 21491891 ~ 21540077 (-) False XLOC_010636
TCONS_00020835 mRNA upstream 85908 21547583 ~ 21620947 (-) False XLOC_010637
TCONS_00020834 mRNA upstream 85908 21547583 ~ 21620947 (-) False XLOC_010637
TCONS_00020833 mRNA upstream 85908 21547583 ~ 21620947 (-) False XLOC_010637
TCONS_00020827 other downstream 4654 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020809 other downstream 560763 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020803 other downstream 963242 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020802 other downstream 1062129 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020793 other downstream 1485571 19878844 ~ 19970367 (-) True XLOC_010616
TCONS_00020844 other upstream 345747 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020846 other upstream 361059 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020856 other upstream 451240 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020893 other upstream 1331400 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1873853 23335528 ~ 23336562 (-) False XLOC_010677

Expression Profile

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