RNA id: TCONS_00021800


Basic Information

Item Value
RNA id TCONS_00021800
length 581
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_010649
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21855296 ~ 21856351 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGAGTGTGCATTTACCAAATGACATCAAAATGTAAAAACGTATCCAACAAACATTACGATCCAAGGTTTAAGCTTCCGACTACAACTGAGGATTAAATTCAAGATAATTTACATTATCAACATTAACACCACAGGGAATTCTCTCGAATGGTAGTTACTTGTTTTCTGCTACATTAATTATTCCGTGTCGGGGTGCCACACCAAAAACATTACAGCTTCccaattcaaaacattcagtctttTATTctggttataatcgcaccaaaacgtattaaaaaggtacgtgaattataacagcgcaaacttcatttgtcatttgtttaacccttaaaggctacgtgctgactgactgacaggtgcgtgatgcgtgaggccagcaaacacgacgtagctttcagttagaTTAACAGTTTCCGTAAGTATACTTTATAGTATCTATTGCTCTGCATATTATGATTTATCTAAATAATTTTgcgcacaagcaaagagattgAAATAACGCAATAGGTGTTTAGTAGATCTGTATAAAAAAGGTCTGCCGCGACAGCATGAAAAAATCCTATAGGAAACACAGAGTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022154 lncRNA downstream 18728 21836180 ~ 21836568 (-) True XLOC_010647
TCONS_00021799 lncRNA downstream 47319 21793290 ~ 21807977 (-) False XLOC_010642
TCONS_00020843 lncRNA downstream 52185 21800385 ~ 21803111 (-) True XLOC_010643
TCONS_00022153 lncRNA downstream 315567 21538847 ~ 21539729 (-) True XLOC_010636
TCONS_00020828 lncRNA downstream 393621 21455938 ~ 21461675 (-) False XLOC_010634
TCONS_00021801 lncRNA upstream 60257 21916608 ~ 21917291 (-) True XLOC_010651
TCONS_00021802 lncRNA upstream 103774 21960125 ~ 21990338 (-) True XLOC_010653
TCONS_00022155 lncRNA upstream 143497 21999848 ~ 22006452 (-) True XLOC_010652
TCONS_00021803 lncRNA upstream 152768 22009119 ~ 22012300 (-) False XLOC_010654
TCONS_00020861 lncRNA upstream 152789 22009140 ~ 22012320 (-) True XLOC_010654
TCONS_00020849 mRNA downstream 2214 21851856 ~ 21853082 (-) True XLOC_010648
TCONS_00020848 mRNA downstream 25702 21827338 ~ 21829594 (-) True XLOC_010646
TCONS_00020847 mRNA downstream 25718 21827332 ~ 21829578 (-) False XLOC_010646
TCONS_00020845 mRNA downstream 44628 21808418 ~ 21810668 (-) True XLOC_010644
TCONS_00020842 mRNA downstream 55889 21790604 ~ 21799407 (-) False XLOC_010642
TCONS_00020850 mRNA upstream 25343 21881694 ~ 21888047 (-) False XLOC_010650
TCONS_00020851 mRNA upstream 27080 21883431 ~ 21888047 (-) True XLOC_010650
TCONS_00020852 mRNA upstream 35460 21891811 ~ 21912210 (-) False XLOC_010651
TCONS_00020853 mRNA upstream 35997 21892348 ~ 21915223 (-) False XLOC_010651
TCONS_00020854 mRNA upstream 41873 21898224 ~ 21903083 (-) False XLOC_010651
TCONS_00020846 other downstream 32047 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 46941 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 391578 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 404012 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020809 other downstream 960121 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020856 other upstream 56564 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020893 other upstream 936724 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1479177 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 1479191 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 1483039 23339390 ~ 23346051 (-) True XLOC_010678

Expression Profile

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