RNA id: TCONS_00020862



Basic Information


Item Value
RNA id TCONS_00020862
length 1174
RNA type mRNA
GC content 0.34
exon number 8
gene id XLOC_010655
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22015648 ~ 22022456 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CAATGTGTGGCTGCAGAGGAAACAACCAAGATGAAACAGATCGCTCGAATGTTTTTCGTTTTGTCCCAGTGGTTTAGTGTGATCGAGGGAAAAGCAGGTGAATCGTGTGTTGGAATTCAACAAGTGGACTCCTATTACTTTCCGCTGCCTGATGATGTGGCTGTAAACGTGCAAGATCATCGATGTGATGCTGAGTGGACCATTGATCAATGGTTCACAGCAATCCTTGATGGACTTTCAACACACTTTTCTTATCCCTTCAAAAATGTGACGCAACGTGAAATCATTGTCAGTTACTGTCCTGGTTCTGTCAGATTTCACGTCACTTGTCCTAAATACACCAAGGAACTCACTTGCTCATGCACAAATTTCACAGAAAAAAGCAATCCAGTTTTTAACACTACTCCACCATCTACAAATATGTCCTCCTTGCTATCAGTTCAGCTTTCATCAGTGAGACATCACTATTGCACAGCTGCTGTTTTTGTCGGTTTTGTCCTGACCATTGTTGCTTTGACACTCCTTATCTGCAGGGCTGACAGGAGAGCCTCAGCTGATGAACAAAGGCAGCCTGGTTGAGAAGAAGAACAGTAGGCCTAACCCAAGACCTGTAACAAACATTTTAGCACGAGAGGCCATGCTGTCATGGCGTGGAGTCATGGCAACAagttaaactataataaaaatattatattatattatattatattatattatattatattatattatattatgttatgttatgttatattatattatattatattatattatattatattatattatattatattatattacaacaaCACTGTGATTTTTCACTGTTTGTATCATTCACTTTTGTGTTTGTAAGTTTAAAAATTGATGAGGACTCTTTctacagctttttttttatttaaaccaaTAGGTGATGACAAGTGAGGGTTTTAAATGCAATCACTTTGGTATAAACAAGTTTCTGAATTGTTATTTTTTCAAGTTAGTCAATATTAAATGTCAAACTAATAAAACACCACTACCAGTTTTCTATTCCTTACTGGTTAGACAAACACCAGTTTTGGAGTGAAAGACACAGAGAGTGATACAATCGCAGTGCCATTTAAATACATGCAATATAATCATTATTGtaacaaattatattatattatattatattattcattttctt

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140175

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00020861 lncRNA downstream 3328 22009140 ~ 22012320 (-) True XLOC_010654
TCONS_00021803 lncRNA downstream 3348 22009119 ~ 22012300 (-) False XLOC_010654
TCONS_00022155 lncRNA downstream 9196 21999848 ~ 22006452 (-) True XLOC_010652
TCONS_00021802 lncRNA downstream 25310 21960125 ~ 21990338 (-) True XLOC_010653
TCONS_00021801 lncRNA downstream 98357 21916608 ~ 21917291 (-) True XLOC_010651
TCONS_00020863 lncRNA upstream 38113 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00022156 lncRNA upstream 311836 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00022157 lncRNA upstream 340016 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00021804 lncRNA upstream 489526 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00021805 lncRNA upstream 489526 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00020857 mRNA downstream 8652 21946091 ~ 22006996 (-) False XLOC_010652
TCONS_00020860 mRNA downstream 11246 21947219 ~ 22004402 (-) False XLOC_010652
TCONS_00020859 mRNA downstream 11246 21947219 ~ 22004402 (-) False XLOC_010652
TCONS_00020858 mRNA downstream 11246 21947219 ~ 22004402 (-) False XLOC_010652
TCONS_00020855 mRNA downstream 98287 21908957 ~ 21917361 (-) False XLOC_010651
TCONS_00020864 mRNA upstream 154798 22177254 ~ 22194400 (-) False XLOC_010657
TCONS_00020865 mRNA upstream 155659 22178115 ~ 22192006 (-) True XLOC_010657
TCONS_00020866 mRNA upstream 177054 22199510 ~ 22225295 (-) True XLOC_010658
TCONS_00020867 mRNA upstream 214505 22236961 ~ 22251457 (-) False XLOC_010659
TCONS_00020868 mRNA upstream 214581 22237037 ~ 22251414 (-) True XLOC_010659
TCONS_00020856 other downstream 98323 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 192399 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 207293 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 551930 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 564364 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 770619 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1313072 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 1313086 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 1316934 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 1500805 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile


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