RNA id: TCONS_00022156



Basic Information


Item Value
RNA id TCONS_00022156
length 1226
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id XLOC_010662
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22334292 ~ 22335517 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


tctttAAACAGTGTGGTAGTGTGACCGTGTATAGGATAAGTGGTAGTGattgatgttgataacaaccaatcaGGGGCCAGTGCTGCCTATTTTAGAGCCGGTTGGCTGTGTTAGGTGATGTGTCACCTCCAGCCCCGCCTTTCTTGTTCCGCGTTTGTTGACATCTGTTTCAGGTATGTTAGCggttgtgtgtgtctctctctctctctctctctctttcgatTAACGTTTGGATTAATCATCGTGGTTTCATTTTTAGCCTGGTTTTTCGTTGGTTTTCCTGTTGGTTGCCATGGAGTTAATGACTGCCACCCATTCAGCTCGCTTGTAGCATAAATGGAGATGACTAATTCGTAATACATGAGTGTACTACTCCCGGCTTGGTAAGTTTCTTATGTAGAGATTAAAGGGGAATGCTAGCGTGTGATTTTGCAAACAGTAACCGTTTTTGCATGTGCATATCTCTTGTAGGATTCTCCCTCTCTGTCCTGGGCGATTTATAAATAAAGATCTAACATCTGTAACATTACTCCGGTTGTGTTTGAAAGATTCTGCTATCCTGAGATCTCTAGGGGAAAGAACTACTCCTGTTGTTTACTACTGCTGCCTGCTtctactatctgctgctgctacatttactgctgcagttactactagctgctactgctacccgctactactatctgctgctgctacatTTACTGCTGCAGTTACTACTAGCTGCTACTGCTATCCGCTAACTATCTGCTTGCTGCTACTCTACTGTTGCAGTTACTGCTAACTGCTACAACTAACTGTTACCTGCTCTATTTATTGCTGTTGTTACTACGACCTGCTACTACTATCTCCTATTGCTACTGTTATATAATTTGtgatttttgttctgtttggTTGTGTGATTCGGTGTGCAAAAGAGTGAGTTTTGTGTTCTGTGTGAATCTTGCTTTTCTATAGCGAAACTACAGAAGCTGTATTtggtttttcttttcttgtgtttGGTTTGTTGTTGGTTTTACTTTTGTATAATTTATCCCGtatattgattttgattttccTTGCAGGAACTGAGGTCCCATGGGTGCAGGATCTTGAGGTGGTGGTGGTGTCACTGCACTTGACATTTTTGCTGTGGACGGTTTGGGAAGTGTGGAGTGTGTGGAtctagtgtggtgtgtgtgtgtggaagtgtgcTTTTTGAACACAACGGAGCACTGGTGATTCTCCCC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00020863 lncRNA downstream 269836 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00020861 lncRNA downstream 321972 22009140 ~ 22012320 (-) True XLOC_010654
TCONS_00021803 lncRNA downstream 321992 22009119 ~ 22012300 (-) False XLOC_010654
TCONS_00022155 lncRNA downstream 327840 21999848 ~ 22006452 (-) True XLOC_010652
TCONS_00021802 lncRNA downstream 343954 21960125 ~ 21990338 (-) True XLOC_010653
TCONS_00022157 lncRNA upstream 26955 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00021804 lncRNA upstream 176465 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00021805 lncRNA upstream 176465 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00020894 lncRNA upstream 457558 22793075 ~ 22863320 (-) True XLOC_010674
TCONS_00022158 lncRNA upstream 559159 22894676 ~ 22986656 (-) False XLOC_010675
TCONS_00020870 mRNA downstream 31162 22295662 ~ 22303130 (-) True XLOC_010661
TCONS_00020869 mRNA downstream 40027 22288777 ~ 22294265 (-) True XLOC_010660
TCONS_00020867 mRNA downstream 82835 22236961 ~ 22251457 (-) False XLOC_010659
TCONS_00020868 mRNA downstream 82878 22237037 ~ 22251414 (-) True XLOC_010659
TCONS_00020866 mRNA downstream 108997 22199510 ~ 22225295 (-) True XLOC_010658
TCONS_00020871 mRNA upstream 28183 22363700 ~ 22385705 (-) True XLOC_010664
TCONS_00020872 mRNA upstream 142644 22478161 ~ 22483013 (-) True XLOC_010665
TCONS_00020874 mRNA upstream 185195 22520712 ~ 22585309 (-) False XLOC_010667
TCONS_00020873 mRNA upstream 185195 22520712 ~ 22585309 (-) False XLOC_010667
TCONS_00020875 mRNA upstream 189614 22525131 ~ 22544047 (-) False XLOC_010667
TCONS_00020856 other downstream 416967 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 511043 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 525937 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 870574 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 883008 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 457558 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1000011 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 1000025 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 1003873 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 1187744 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile


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