RNA id: TCONS_00020882


Basic Information

Item Value
RNA id TCONS_00020882
length 2955
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_010670
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22722352 ~ 22729491 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAAGTCCAGTGTGAAGTTTAAGGCAAATGATAAACTTCTGCAGAGTGAAGGCATAGACAGCTTCATCTAGACTTACTTTAAAATGTTTGCGTTTACAACAAACTCTAATTTCCTGCGCTtcttttggagatttgcattagGTTTAAGTATCTGCAATGTGGTTTTAACTCGAATAACAAAGCGCTGCATTACTATAGAGGAGCATCTTCTCAAACAAATGCCGTGGACTCCACACTGCCTCCATTATCCAGGAAAGGGTCCATACGCAAACTGCAATATCACAGACCTGAGCACTGATCTGTCACAGGTAGGCTTTGAGGTTAGAACCCTTTGTGTCTTTGGAGATATTACGAGCATTCCTGCTAAAGCCTTTTCACACTTACCTTCTCTGGAGGTACTTCACATAGATGGAATACGTCTGGAGAGAGTTCAGGCTGGTGCCTTTGAAGGACTCCCCAATCTTAAGTATCTGTCAATGCTTTTCAGTGATGAACTCTACAGATTGGTCAGAATAGATAATCGGTCATTTGCTGGTCTGAATAATTTGGAGGAGTTGTCACTGACAGGTCTGATGCTGCTCAATGGATCCAGTGGTATATTTGACCCATTGGTTAGTTTAATCAGATTAGACATTGTCAGAACTTGCGCACAAGACCTTGGTGAAATTTTCTGTTGTATTTCGAATGGAATGACCCGGCTAAGACACCTAAATGTAGAAGACAGTGAGATTTCAACAATTGAGAACAAAGGATGTCCAGGGGGCTCAATGACCTGGCCGCTTACTGCCCTTTCTGGGGttcaaaatctgtatttaattgggaacaatattaaatatattcaagCAAACTCCTTAATTATATTCCAGAACCTCTCAAGCCTTTTTCTGGAGTTCGAGGGCAAGTCCCTGGGCAGTATTTGGGAGTCTGGAGTTGGAAAAGTCAATGATTTGACTTTGAAAGggaaagtattaaaaaaatactcaACAAACTTCAAAGATTTGTGTCATCTTGTATCGAGTCTTTATTCGCAATCACTCAGCCTTGTTTATACATCAATAGACAGACTAACTGCTGAGGACTTGAAGGACTGTGGGACTAAGTTGACAAAGTTATTAATCCAGAATTCCAAAATAGACAACCTAGACTTTAGGTTTTGGACCAGTAAACTGGAAATGCAGGCCCTTCAAATGGCCTACATGAAGTTGACAGATGCTCCCTTTTGTTTTGTTGCGAACAGCACAATGTGGTCTTTAACCTCACTGGACCTCACTGGAAACTCTATCACCAATATTGAAGGAGATCAGTTTGCATGTATGCCTTTTCTTGAGCAGCTCTATCTGAGCCAGAATGCCATTAAAACCCTACAGCTGCATGCATTTCGAGGTTTGCCTCGACTTAAAATCCTGCAACTTGACTCAAACAAGATCTGGCAGCTTTCAGCCAATGATTTCAAAAACCTTCGGGCTTTAGAGGTTCTGCTGATTAACGATAACATCATTGAGACCATAGAGACAGGAACATTTTGGGACCAGCGGGAGCTTTGTGAACTGTCATTTGGTAGACTGGAATATGTTTATGAGTTGCATCTAGAGAACATTTTTTTTGAATTTCCACCAAAGTTACAGCGACTCAGCATCGATGCACATTATGGAACTAATATTTACATTGGAAACGCATCACCACCCAATGGAACATTTGCTTTGGAACTAAATGGAGAGAGACTGGGTTTTGTGGGCTGTGATAGTGATGTTTTAATGGCAGTCCGTGAGTTGAAAGTCAATTGCACCTACTTCCTTTGCAAGGACAGTTTTATGGCTCCCTATTTCCTAAACCTGGAATCTCTCGAGATCTCAGGCGGAGCTGAAAGGGCACCTCTCAATTACGCTACAATCAATAATCTTCACCATCTCAAGCATCTCAAACTCGCAAGGTTGAACTTCCCCAATTACACAGAATCTAGGAGTGCCTTCTGGAACCTGACTCAACTCCAGACCCTCGTGGTGGTAAACTGTCATCTTAGTTTCCTCACCAAGAGCATGTTCAGAGATCTGACCTCTCTGCAGCTGTTGCGTCTCTACAGTGACAGTCCTCTGATCTTGACTGATGGTGTGTTTGGGGTTTTACCAGTGCTAAAAGCGTTCATTCTGGACAGAGTAGATTTCCAGTGCAGTTGTGAGAATGGCTGGCTACTTGATTGGGCAGACAGCACTGAAAAAGTGCAGGTTATCTACTTGCAAAAGCAGCAGTGTGTCTGGCACTATCAGAAACTCAACTTCTTGGCCACAATGGAGAAGCTCTGCCAGACTGATGCGCAGTACATCTGCTATGTAGCCACAGCCAGCAGCATTAGTCTTCTGTTGTCGGCAGCCGTTGGATATCAATTTGCTCGCTGGCCTTCACTTGTCCTCTTCTTACGCCTGAAAGGTTGGATGGAGAGGAGGTTTGGTCGACGGTGGAAtaggagaagaagaagaatggAGGATGACTATGGGGAGATCGAGGAGATGCAGTATGATGCATTTGTGTCTTTCTGCAGCCAGGATGAGGCTTGGGTTTTGGGGGAAATGGCTTCTCGGCTGGAGGAACAAGGTAACCCAAGACTGAGACTGTGTCTGCACAACAGAGACTTTGAGGTGGGTAAAGATATCATGGACAACATCACAGACAGCATCCACAACAGTCAGTGCACTGTTTGTCTGATCAGCCGGCGGTATCTGCGCAGTGACTGGTGTGGTCTGGAGATGCGAGTGGCCACACACCGGCAGCTGGAAGAGCAGAAACACCGTCTCATCCTCATCTTCCTCCAACACATCTCTCCCTTTGAGCTCTCAGCCTTTCATCGGTAAGTGGCGGTGCATTTACATAAAACGGCAACATTTAGTGTAACAAAGGTCACCAAAAGGGGTCGGGTTGGTTAAAGAGGGGGGAGGGGGGACATTAACTTTATTAtcatg

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040220-3 Predicted to enable signaling receptor activity. Predicted to be involved in inflammatory response and toll-like receptor signaling pathway. Predicted to act upstream of or within innate immune response and signal transduction. Predicted to be located in cytoplasm. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000189854

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021805 lncRNA downstream 209083 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00021804 lncRNA downstream 210141 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00022157 lncRNA downstream 356164 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00022156 lncRNA downstream 389087 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00020863 lncRNA downstream 660148 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00020894 lncRNA upstream 63584 22793075 ~ 22863320 (-) True XLOC_010674
TCONS_00022158 lncRNA upstream 165185 22894676 ~ 22986656 (-) False XLOC_010675
TCONS_00020897 lncRNA upstream 287466 23016957 ~ 23019562 (-) False XLOC_010676
TCONS_00022159 lncRNA upstream 287466 23016957 ~ 23019603 (-) True XLOC_010676
TCONS_00020900 lncRNA upstream 606439 23335930 ~ 23337596 (-) False XLOC_010677
TCONS_00020879 mRNA downstream 11412 22695211 ~ 22713192 (-) False XLOC_010669
TCONS_00020880 mRNA downstream 11452 22695578 ~ 22713152 (-) True XLOC_010669
TCONS_00020877 mRNA downstream 41218 22681818 ~ 22683386 (-) False XLOC_010668
TCONS_00020878 mRNA downstream 41566 22682280 ~ 22683038 (-) True XLOC_010668
TCONS_00020876 mRNA downstream 139315 22555855 ~ 22585289 (-) True XLOC_010667
TCONS_00020883 mRNA upstream 7990 22737481 ~ 22747125 (-) False XLOC_010671
TCONS_00020884 mRNA upstream 9814 22739305 ~ 22744806 (-) True XLOC_010671
TCONS_00020885 mRNA upstream 20683 22750174 ~ 22775528 (-) False XLOC_010672
TCONS_00020886 mRNA upstream 24629 22754120 ~ 22775487 (-) False XLOC_010672
TCONS_00020887 mRNA upstream 32128 22761619 ~ 22775484 (-) False XLOC_010672
TCONS_00020856 other downstream 807279 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 901355 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 916249 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 1260886 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 1273320 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 63584 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 606037 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 606051 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 609899 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 793770 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_04419264_04422151.mRNA True 4131 mRNA 0.42 2 CI01000027 4418107 ~ 4422380 (-)