RNA id: TCONS_00020884


Basic Information

Item Value
RNA id TCONS_00020884
length 533
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_010671
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22737481 ~ 22747125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCTCTTCTTCCGCCTGAAAGGTTGGATGGAGAGAAGGTTTGGTCGACGGTGGAAtaggagaagaagaagaatggAGGATGACTATGGGGAGATCGAGGAGATGCAGTATGATGCTTTTGTGTCTTTCTGCAGCCAGGATGAGGCTTGGGTTTTGGGGGAAATGGCTCCTCGGCTGGAGGATCAAGGTAACCCAAGACTGAGACTGTGTCTGCACAACAGAGACTTTGAGGTGGGTAAAGATATCATGGACAACATCACAGACAGCATCCACAACAGTCAGTGCACTGTTTGTCTGATCAGCCGGCGGTATCTGCGCAGTGACTGGTGTGGTCTGGAGATGCGAGTGGCCACACACCGGCAGCTGGAAGAGCAGAAACACCGTCTCATCCTCATCTTCCTCCAACACATCTCTCCCTTTGAGCTCTCTGCTTTTCATCGTTTGGCAAAACTGGTGAGATCCCGTACATATCTGGACTGGCCAGAGGATGAAGGAGACCGAGAGCACTTCTGGGATCGACTAAGGAGGAACAT

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040220-3 Predicted to enable signaling receptor activity. Predicted to be involved in inflammatory response and toll-like receptor signaling pathway. Predicted to act upstream of or within innate immune response and signal transduction. Predicted to be located in cytoplasm. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000139243

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021805 lncRNA downstream 223784 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00021804 lncRNA downstream 224842 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00022157 lncRNA downstream 370865 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00022156 lncRNA downstream 403788 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00020863 lncRNA downstream 674849 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00020894 lncRNA upstream 48269 22793075 ~ 22863320 (-) True XLOC_010674
TCONS_00022158 lncRNA upstream 149870 22894676 ~ 22986656 (-) False XLOC_010675
TCONS_00020897 lncRNA upstream 272151 23016957 ~ 23019562 (-) False XLOC_010676
TCONS_00022159 lncRNA upstream 272151 23016957 ~ 23019603 (-) True XLOC_010676
TCONS_00020900 lncRNA upstream 591124 23335930 ~ 23337596 (-) False XLOC_010677
TCONS_00020882 mRNA downstream 9814 22724604 ~ 22729491 (-) True XLOC_010670
TCONS_00020881 mRNA downstream 10186 22722352 ~ 22729119 (-) False XLOC_010670
TCONS_00020879 mRNA downstream 26113 22695211 ~ 22713192 (-) False XLOC_010669
TCONS_00020880 mRNA downstream 26153 22695578 ~ 22713152 (-) True XLOC_010669
TCONS_00020878 mRNA downstream 56267 22682280 ~ 22683038 (-) True XLOC_010668
TCONS_00020885 mRNA upstream 5368 22750174 ~ 22775528 (-) False XLOC_010672
TCONS_00020886 mRNA upstream 9314 22754120 ~ 22775487 (-) False XLOC_010672
TCONS_00020887 mRNA upstream 16813 22761619 ~ 22775484 (-) False XLOC_010672
TCONS_00020888 mRNA upstream 22894 22767700 ~ 22775480 (-) True XLOC_010672
TCONS_00020889 mRNA upstream 34423 22779229 ~ 22781446 (-) True XLOC_010673
TCONS_00020856 other downstream 821980 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 916056 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 930950 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 1275587 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 1288021 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 48269 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 590722 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 590736 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 594584 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 778455 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile

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