RNA id: TCONS_00020893


Basic Information

Item Value
RNA id TCONS_00020893
length 740
RNA type processed_transcript
GC content 0.56
exon number 7
gene id XLOC_010674
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22781854 ~ 22863603 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAAACGAGCCTGGCGAGACCAGCGCTTATCTCGTGTCTGGACCAACTTTGTTCTTCAGATGTGATATTTGTAGGAGTTGATCTGAAAAGCGCTTTGGAGAGCAGGACCGGAATCGAGCGGCCGAGAGGAAGCGAGCGGGATATGAACCGGCTGGGCGGGGCCTCACGGAGGGCCCGTGTGGAAGGGGGCCAGCTCGGCGGAGATGAGTGGACACGGCATGGCTCCTTTGTCAACAAGCCTACCCGAGGCTGGCTGCACTCGGACATTGTGGTCAGCACCAGCGGAGTCTCCTACACTGTCAGGTATATGGGCTGCGTGGAGGTGCTGCAGTCAATGAGAGCACTGGACTTCAACACCAGAACTCAGGTTACCAGGGAGGCGATATCAGTGGTGTGTGAGGCGGTACCAGGTGCCAAAGGAGCTCAGCGAAGGAGAAAGCCCTCCTCTCGCTGTCTGTCCTCCATCTTAGGGAAGAGTAATCTCCAGTTTGCTGGAATGACAATCACCCTCACCGTGTCGACCAGCAGTCTGAACCTAATGGCCATCGACTGCAAACAGGACACAGCGGAGTATGTTGCATACGTCGCCAAAGACCCCGTCAATCAGCGAGCGTGTCATATCCTGGAGTGCTCTGAAGGCTTGGCTCAGGAGGTCATCAGCACCATAGGTCAGGCTTTCGAGCTCCGCTTTAAACAATACCTAAAAAACCCACCCAAAGTGGTCACCCCCCATGACCGG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0001525 angiogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0030971 receptor tyrosine kinase binding molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
ko04013 MAPK signaling pathway - fly
ko04012 ErbB signaling pathway
ko04014 Ras signaling pathway
ko04072 Phospholipase D signaling pathway
ko04510 Focal adhesion
ko04650 Natural killer cell mediated cytotoxicity
ko04062 Chemokine signaling pathway
ko04910 Insulin signaling pathway
ko04915 Estrogen signaling pathway
ko04917 Prolactin signaling pathway
ko04926 Relaxin signaling pathway
ko04935 Growth hormone synthesis, secretion and action
ko04722 Neurotrophin signaling pathway
ko05206 MicroRNAs in cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05214 Glioma
ko05220 Chronic myeloid leukemia
ko05224 Breast cancer
ko05100 Bacterial invasion of epithelial cells
ko05034 Alcoholism
ko01521 EGFR tyrosine kinase inhibitor resistance
ko01522 Endocrine resistance

ZFIN:

id description
ZDB-GENE-030131-2538 Predicted to enable receptor tyrosine kinase binding activity. Acts upstream of or within angiogenesis. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Orthologous to human SHC1 (SHC adaptor protein 1).

Ensembl:

ensembl_id ENSDART00000133910

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021805 lncRNA downstream 277554 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00021804 lncRNA downstream 278612 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00022157 lncRNA downstream 424635 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00022156 lncRNA downstream 457558 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00020863 lncRNA downstream 728619 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00022158 lncRNA upstream 31361 22894676 ~ 22986656 (-) False XLOC_010675
TCONS_00020897 lncRNA upstream 153642 23016957 ~ 23019562 (-) False XLOC_010676
TCONS_00022159 lncRNA upstream 153642 23016957 ~ 23019603 (-) True XLOC_010676
TCONS_00020900 lncRNA upstream 472615 23335930 ~ 23337596 (-) False XLOC_010677
TCONS_00022160 lncRNA upstream 473175 23336490 ~ 23337574 (-) True XLOC_010677
TCONS_00020889 mRNA downstream 11629 22779229 ~ 22781446 (-) True XLOC_010673
TCONS_00020885 mRNA downstream 17547 22750174 ~ 22775528 (-) False XLOC_010672
TCONS_00020886 mRNA downstream 17588 22754120 ~ 22775487 (-) False XLOC_010672
TCONS_00020887 mRNA downstream 17591 22761619 ~ 22775484 (-) False XLOC_010672
TCONS_00020888 mRNA downstream 17595 22767700 ~ 22775480 (-) True XLOC_010672
TCONS_00020895 mRNA upstream 33138 22896453 ~ 22930925 (-) False XLOC_010675
TCONS_00020896 mRNA upstream 55624 22918939 ~ 22989262 (-) True XLOC_010675
TCONS_00020901 mRNA upstream 475747 23339062 ~ 23346095 (-) False XLOC_010678
TCONS_00020903 mRNA upstream 490226 23353541 ~ 23372666 (-) False XLOC_010679
TCONS_00020904 mRNA upstream 490229 23353544 ~ 23379464 (-) True XLOC_010679
TCONS_00020856 other downstream 875750 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 969826 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 984720 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 1329357 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 1341791 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020898 other upstream 472213 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 472227 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 476075 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 659946 23523261 ~ 23523375 (-) True XLOC_010681
TCONS_00020907 other upstream 729149 23592464 ~ 23592599 (-) True XLOC_010682