RNA id: TCONS_00020898


Basic Information

Item Value
RNA id TCONS_00020898
length 611
RNA type processed_transcript
GC content 0.40
exon number 2
gene id XLOC_010677
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23335528 ~ 23337596 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATGATTCACTTACCAACTATAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGAGGCTCTGAGATGCCTCATTAAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATATATGGTGGACATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTACGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGatgcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022159 lncRNA downstream 315925 23016957 ~ 23019603 (-) True XLOC_010676
TCONS_00020897 lncRNA downstream 315966 23016957 ~ 23019562 (-) False XLOC_010676
TCONS_00022158 lncRNA downstream 348872 22894676 ~ 22986656 (-) False XLOC_010675
TCONS_00020894 lncRNA downstream 472208 22793075 ~ 22863320 (-) True XLOC_010674
TCONS_00021805 lncRNA downstream 820007 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00022162 lncRNA upstream 380269 23716831 ~ 23719573 (-) False XLOC_010683
TCONS_00022161 lncRNA upstream 380269 23716831 ~ 23719573 (-) True XLOC_010683
TCONS_00020910 lncRNA upstream 452056 23788618 ~ 23792874 (-) True XLOC_010684
TCONS_00022163 lncRNA upstream 648214 23984776 ~ 23993231 (-) False XLOC_010686
TCONS_00022164 lncRNA upstream 651154 23987716 ~ 23995329 (-) False XLOC_010686
TCONS_00020896 mRNA downstream 346266 22918939 ~ 22989262 (-) True XLOC_010675
TCONS_00020895 mRNA downstream 404603 22896453 ~ 22930925 (-) False XLOC_010675
TCONS_00020891 mRNA downstream 471925 22781854 ~ 22863603 (-) False XLOC_010674
TCONS_00020890 mRNA downstream 471925 22781854 ~ 22863603 (-) False XLOC_010674
TCONS_00020892 mRNA downstream 472180 22782010 ~ 22863348 (-) False XLOC_010674
TCONS_00020901 mRNA upstream 2500 23339062 ~ 23346095 (-) False XLOC_010678
TCONS_00020903 mRNA upstream 16979 23353541 ~ 23372666 (-) False XLOC_010679
TCONS_00020904 mRNA upstream 16982 23353544 ~ 23379464 (-) True XLOC_010679
TCONS_00020905 mRNA upstream 129532 23466094 ~ 23471387 (-) True XLOC_010680
TCONS_00020908 mRNA upstream 452054 23788616 ~ 23797570 (-) False XLOC_010684
TCONS_00020893 other downstream 472213 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020856 other downstream 1418203 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 1512279 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 1527173 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 1871810 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020902 other upstream 2828 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 186699 23523261 ~ 23523375 (-) True XLOC_010681
TCONS_00020907 other upstream 255902 23592464 ~ 23592599 (-) True XLOC_010682
TCONS_00020920 other upstream 916641 24253203 ~ 24518040 (-) True XLOC_010689
TCONS_00020921 other upstream 1057784 24394346 ~ 24394463 (-) True XLOC_010690

Expression Profile

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