RNA id: TCONS_00022164


Basic Information

Item Value
RNA id TCONS_00022164
length 832
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_010686
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23984776 ~ 23995329 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATGAGCAGTGGCTTTTGGAGACGTGAGACCATTTTTTTGGGAGAACAGCTGCTCAAGACATTTCTGGGAGGTGCTGAAgctgaaccactttgatgataAACTTTGGCTTGTAGCCCTTGATGGTCTCTACATATCCACTGGCAGTGTCCACACTCTGGTCATAGTAGGATTTCAGGGTGTCGACCACAACAGCGATGGTTCCCTTCTCATCCTCAGCCTGCCTGGGAACACGAAAGCTCTCCGCTCCTGCACACCCGAAAAAATGTATCAGAGATGAGTCCTTCTTCATTCTAAATCACATGTGCTGCATTACAAATCGCATACTCTCTTAAGTAGGGACTATTTTTAATAAGCTTAAACTATGCGACCACTAAAAGTATATATAAATGGATGTACTGCAGCTGATGTGTAGAGATGGAGGTTCTTTTTGCTTCCTTTTTgagttcaaactactttttttcttttgtcacaTATTGTCTTTTACCTACTGTTGAAATAGTAGGAAAGTAGATGTGATTTCGGATCCAGCCATAGTCACTTCACTGTATTGCCCAATTAGCAAATAGTGCAGACTtaattaggtaacactttattttgatggtccatttgagtattattagactgtctgggtaatatctgctgatactgctccttcaacagacatttaactgactataagaaattttgcaagtacatgtcaacctacactaaccccaacctaacagtctacttataatctaatgagaaatagttggcatgtagatgcaatgtaacttaaatttaacaaacagaccatcaaaataaagtgtgacccataacTGTAATcaaag

Function

GO:

id name namespace
GO:0004518 nuclease activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020910 lncRNA downstream 194842 23788618 ~ 23792874 (-) True XLOC_010684
TCONS_00022162 lncRNA downstream 268143 23716831 ~ 23719573 (-) False XLOC_010683
TCONS_00022161 lncRNA downstream 268143 23716831 ~ 23719573 (-) True XLOC_010683
TCONS_00020900 lncRNA downstream 650120 23335930 ~ 23337596 (-) False XLOC_010677
TCONS_00020927 lncRNA upstream 600819 24596148 ~ 24596681 (-) True XLOC_010693
TCONS_00020941 lncRNA upstream 675831 24671160 ~ 24672862 (-) True XLOC_010698
TCONS_00022166 lncRNA upstream 711440 24706769 ~ 24708587 (-) True XLOC_010700
TCONS_00020950 lncRNA upstream 1004350 24999679 ~ 25012398 (-) True XLOC_010703
TCONS_00022167 lncRNA upstream 1073175 25068504 ~ 25072892 (-) True XLOC_010704
TCONS_00020911 mRNA downstream 102234 23880004 ~ 23885482 (-) True XLOC_010685
TCONS_00020909 mRNA downstream 187232 23788616 ~ 23800484 (-) False XLOC_010684
TCONS_00020908 mRNA downstream 190146 23788616 ~ 23797570 (-) False XLOC_010684
TCONS_00020905 mRNA downstream 516329 23466094 ~ 23471387 (-) True XLOC_010680
TCONS_00020904 mRNA downstream 608252 23353544 ~ 23379464 (-) True XLOC_010679
TCONS_00020912 mRNA upstream 34943 24030272 ~ 24044664 (-) False XLOC_010687
TCONS_00020913 mRNA upstream 37807 24033136 ~ 24135573 (-) False XLOC_010687
TCONS_00020914 mRNA upstream 54742 24050071 ~ 24135508 (-) True XLOC_010687
TCONS_00020915 mRNA upstream 192785 24188114 ~ 24195361 (-) False XLOC_010688
TCONS_00020916 mRNA upstream 194636 24189965 ~ 24195326 (-) False XLOC_010688
TCONS_00020907 other downstream 395117 23592464 ~ 23592599 (-) True XLOC_010682
TCONS_00020906 other downstream 464341 23523261 ~ 23523375 (-) True XLOC_010681
TCONS_00020902 other downstream 641665 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020899 other downstream 650141 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020898 other downstream 651154 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020920 other upstream 257874 24253203 ~ 24518040 (-) True XLOC_010689
TCONS_00020921 other upstream 399017 24394346 ~ 24394463 (-) True XLOC_010690
TCONS_00020938 other upstream 661635 24656964 ~ 24658657 (-) True XLOC_010696
TCONS_00020957 other upstream 1333202 25328531 ~ 25328647 (-) True XLOC_010710
TCONS_00020965 other upstream 1509229 25504558 ~ 25509098 (-) False XLOC_010716

Expression Profile

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