RNA id: TCONS_00000178


Basic Information

Item Value
RNA id TCONS_00000178
length 1914
RNA type mRNA
GC content 0.52
exon number 15
gene id XLOC_000091
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8110562 ~ 8163167 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGTTTAACTCCACCACCAAATTTTTCGCTCTTTCCCAGTCTTTCAGCGTGTCCGATATCATTGTGATCGGAGCGTATTTTTTATTGAACGTCGCAGTTGGAATATGGtcatCCTGCAGAGTGAGCCGAAACACACTCAGTGGATATTTTCTGGCCGGTAGAGACATGGCTTGGTGGCCGATCGGCGCGTCTCTGTTCGCCAGCAGCGAGGGCTCCGGGCTCTTCATCGGTCTGGCGGGGACCGGAGCCGCGGGAGGAATCGCTGTGGCCGGATTTGAATGGAATGCAACTTATGCCTTGCTGGCTCTTGCCTGGGTCTTTGTCCCAGTTTATGTGTCCTCTGGGatTGTCACAATGCCAGAGTATCTGGGTCGGCGGTTTGGAGGAGAGAGAATTCGCATGTACTTGTCAGCTCTCAGTCTGCTGCTGTCTGTGTTTACCAAGATCTCGACGGATCTGTACTCTGGAGCCCTGTTTGTCCAGGTGTGTTTGGGCTGGAATCTCTACCTCTCCACTGTGCTCATGCTGGTCGTCACTGCCCTCTACACTATTGCAGGTGGCTTGGCTGCTGTAATCTACACCGACACTCTTCAGACCTTCATCATGATCATCGGAGCTGTCATCCTCACCATCACGGCATTCAACAAAATTGGAGGCTACAGTAACCTGGAGAGCGTGTATTTGCAAGCCGTGCCGTCCAAGATCATCCCGAACACGACATGTCACCTGCCCAGACATGATGCCATGCACCTGTTCAGAGACCCAGTGCATGGAGATCTTCCCTGGCCAGGCATGACGCTGGGATTAACCATCATTGCAACATGGTACTGGTGCACGGATCAGGTAATCGTGCAGAGGTCTCTGTCAGCCAAGAGTCTGAGTCATGCCAAAGGAGCGTCCATCTTTGCCAGCTATCTCAAGTTGCTTCCCATGATGTTCATCATCTTACCTGGCATGATCAGCAGGGCACTGTACCCAGACACAGTGGCTTGTGTGGACCCTGAAGAGTGTGTGAAGGTGTGTGGCGCAGAGGTGGGCTGCTCCAACATTGCTTTTCCTAAACTGGTCATCGAACTCATGCCTAGCGGCCTTCGGGGGTTAATGATAGCTGTAATGATGGCCGCATTGATGTCATCACTTACCTCCATCTTCAACAGCAGCAGCACCCTCTTCACCATGGACATCTGGAAGAAATATCGAAGAGGTGCAAGCGAAAAAGAGCTGCTACTTGTTGGCAGGATAGTGACTGTCATTCTGGTGGTGATCAGCGTGGTGTGGATCCCAATTCTTCAGAGTGCTAACAGCGGTCAGCTCTATGTTTACATCCAGTCGGTGACCAGCTATCTGGCCCCTCCTGTTACTGCCATTTTTGTAATGGCGGTTTTTTGGAAAAGAACCAACGAAGCGGGAGCGTTCTGGGGCCTGATGGTGGGTTTAGTGGTGGGATTGACACGGATGGTCCTGGAGTTTGCGTTTCCTCCCCCTCGCTGTGGCGTGTTTGACCCTGCTCCCTCTGTCTTGAGGAGTATGCACTACCTGCACTTCGCCATCATACTGTGTGCCCTCACTGCTATAGTAGTGGCTGTGATCAGTCTATTGACCCCTCCACCCACTGAGGAACAGacaCGTAATCTTACATGGTGGACTCTCCACAACAGCACCGAGAGAGAAATCCCTCTGCAGAAAGTCTCTACACTCAGCCGCAGGACAGACGGCTGTGAGTCTGTGCGCAGGGGTAAATGTGTCCGCACCGCTGGCTTCTGCAGCCCTCGACCAGGCCGTTTCGCATCCGGGACTCCACCCCCCATCATTCACAGCACCACAGAAGATCCCTTCTGGTCTCGTTTCTGCTGTGTCAATGCCATCATTCTCATGTGCGTTAACATCTTCCTCTATGCTTACTACGCATAA

Function

GO: NA

KEGG:

id description
ko02000 Transporters

Ensembl:

ensembl_id ENSDART00000112160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002810 lncRNA upstream 436333 7672121 ~ 7674229 (+) True XLOC_000087
TCONS_00000171 lncRNA upstream 549708 7556999 ~ 7560854 (+) False XLOC_000086
TCONS_00000166 lncRNA upstream 556347 7546683 ~ 7554215 (+) True XLOC_000085
TCONS_00000161 lncRNA upstream 570846 7529853 ~ 7539716 (+) False XLOC_000085
TCONS_00003026 lncRNA downstream 410610 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00000190 lncRNA downstream 412140 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00000192 lncRNA downstream 424063 8587230 ~ 8590636 (+) False XLOC_000100
TCONS_00003027 lncRNA downstream 424178 8587345 ~ 8590636 (+) False XLOC_000100
TCONS_00003028 lncRNA downstream 425065 8588232 ~ 8590636 (+) True XLOC_000100
TCONS_00000177 mRNA upstream 121248 7988052 ~ 7989314 (+) True XLOC_000090
TCONS_00000176 mRNA upstream 148866 7956030 ~ 7961696 (+) True XLOC_000089
TCONS_00000175 mRNA upstream 427190 7679328 ~ 7683372 (+) True XLOC_000088
TCONS_00000174 mRNA upstream 430454 7679328 ~ 7680108 (+) False XLOC_000088
TCONS_00000172 mRNA upstream 549548 7557018 ~ 7561014 (+) False XLOC_000086
TCONS_00000180 mRNA downstream 141737 8304904 ~ 8398249 (+) False XLOC_000092
TCONS_00000181 mRNA downstream 151659 8314826 ~ 8404005 (+) True XLOC_000092
TCONS_00000182 mRNA downstream 278904 8442071 ~ 8507230 (+) False XLOC_000093
TCONS_00000183 mRNA downstream 324289 8487456 ~ 8489295 (+) False XLOC_000093
TCONS_00000184 mRNA downstream 329212 8492379 ~ 8498200 (+) True XLOC_000093
TCONS_00000154 other upstream 1046619 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 1322758 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 1925030 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 2608478 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 2660118 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 990927 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 991826 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 1055481 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 1888607 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 1888617 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

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