Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00022168 |
| length | 2819 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | XLOC_010708 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 25238250 ~ 25241068 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | biological_process |
| GO:0019222 | regulation of metabolic process | biological_process |
| GO:0080090 | regulation of primary metabolic process | biological_process |
| GO:0051171 | regulation of nitrogen compound metabolic process | biological_process |
| GO:0009889 | regulation of biosynthetic process | biological_process |
| GO:0031323 | regulation of cellular metabolic process | biological_process |
| GO:0031326 | regulation of cellular biosynthetic process | biological_process |
| GO:0051252 | regulation of RNA metabolic process | biological_process |
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0060255 | regulation of macromolecule metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0044464 | obsolete cell part | cellular_component |
| GO:0005623 | obsolete cell | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0140110 | transcription regulator activity | molecular_function |
| GO:0001067 | regulatory region nucleic acid binding | molecular_function |
| GO:1990837 | sequence-specific double-stranded DNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022167 | lncRNA | downstream | 165358 | 25068504 ~ 25072892 (-) | True | XLOC_010704 |
| TCONS_00020950 | lncRNA | downstream | 225852 | 24999679 ~ 25012398 (-) | True | XLOC_010703 |
| TCONS_00022166 | lncRNA | downstream | 529663 | 24706769 ~ 24708587 (-) | True | XLOC_010700 |
| TCONS_00020941 | lncRNA | downstream | 565388 | 24671160 ~ 24672862 (-) | True | XLOC_010698 |
| TCONS_00020927 | lncRNA | downstream | 641569 | 24596148 ~ 24596681 (-) | True | XLOC_010693 |
| TCONS_00020958 | lncRNA | upstream | 98868 | 25339936 ~ 25342126 (-) | True | XLOC_010711 |
| TCONS_00020971 | lncRNA | upstream | 263490 | 25504558 ~ 25507732 (-) | False | XLOC_010716 |
| TCONS_00020970 | lncRNA | upstream | 263490 | 25504558 ~ 25508977 (-) | False | XLOC_010716 |
| TCONS_00020966 | lncRNA | upstream | 263490 | 25504558 ~ 25512240 (-) | False | XLOC_010716 |
| TCONS_00020981 | lncRNA | upstream | 406448 | 25647516 ~ 25663820 (-) | False | XLOC_010720 |
| TCONS_00020953 | mRNA | downstream | 4735 | 25231963 ~ 25233515 (-) | True | XLOC_010707 |
| TCONS_00020952 | mRNA | downstream | 32202 | 25174628 ~ 25206048 (-) | True | XLOC_010706 |
| TCONS_00020951 | mRNA | downstream | 152923 | 25080764 ~ 25085327 (-) | True | XLOC_010705 |
| TCONS_00020949 | mRNA | downstream | 292913 | 24940377 ~ 24945337 (-) | True | XLOC_010702 |
| TCONS_00020948 | mRNA | downstream | 406212 | 24819118 ~ 24832038 (-) | True | XLOC_010701 |
| TCONS_00020954 | mRNA | upstream | 34699 | 25275767 ~ 25285582 (-) | False | XLOC_010709 |
| TCONS_00020955 | mRNA | upstream | 37190 | 25278258 ~ 25285469 (-) | False | XLOC_010709 |
| TCONS_00020956 | mRNA | upstream | 39275 | 25280343 ~ 25285469 (-) | True | XLOC_010709 |
| TCONS_00020959 | mRNA | upstream | 123245 | 25364313 ~ 25368048 (-) | True | XLOC_010712 |
| TCONS_00020960 | mRNA | upstream | 130585 | 25371653 ~ 25380969 (-) | False | XLOC_010713 |
| TCONS_00020938 | other | downstream | 579593 | 24656964 ~ 24658657 (-) | True | XLOC_010696 |
| TCONS_00020920 | other | downstream | 720210 | 24253203 ~ 24518040 (-) | True | XLOC_010689 |
| TCONS_00020921 | other | downstream | 843787 | 24394346 ~ 24394463 (-) | True | XLOC_010690 |
| TCONS_00020907 | other | downstream | 1645651 | 23592464 ~ 23592599 (-) | True | XLOC_010682 |
| TCONS_00020906 | other | downstream | 1714875 | 23523261 ~ 23523375 (-) | True | XLOC_010681 |
| TCONS_00020957 | other | upstream | 87463 | 25328531 ~ 25328647 (-) | True | XLOC_010710 |
| TCONS_00020965 | other | upstream | 263490 | 25504558 ~ 25509098 (-) | False | XLOC_010716 |
| TCONS_00020982 | other | upstream | 412627 | 25653695 ~ 25663669 (-) | True | XLOC_010720 |
| TCONS_00021003 | other | upstream | 1137229 | 26378297 ~ 26379442 (-) | True | XLOC_010732 |
| TCONS_00021035 | other | upstream | 2354494 | 27595562 ~ 27598677 (-) | False | XLOC_010752 |
