RNA id: TCONS_00020955


Basic Information

Item Value
RNA id TCONS_00020955
length 542
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_010709
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25275767 ~ 25285582 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGATTTGGAGCACGGAACACATATTCAGCTACCCCTGGGAGACTGTGATCAAAGCAGCTATGAGGAAGTATCCTAATCCAATGAACCCTAGTGTTGTTGGCGTGGATGTGCTGGACAGGAACCTGGACACACATGGACGTCTGCACAGCCATCGGCTCCTCAGCACAGAGTGGGGTCTTCCAGGGGTCGTCAAAGCGatTTTAGGGACAAGTCGAACTGTCACGTATGTAAAAGAACATTCTATTGTCGACcccgaagaaaaaaaaatggagctTTGCTCAACAAACATAACCCTAACCAATTTAATATCAGTTGATGAAAGGCTTGTCTACAGGCCTCATCCAGACAATCCAGAAGTCACTGTATTAACCCAGGAAGCAATCATCACGGTGAAGGGTGTCAGTCTGAGCAGCTACCTTGAAGGACTGATGGCTTTAACTATGTCAGCCAATGCAAGAAAGGGATGGGATGCCATTGAATGGATCATTCAGAACTCTGAAAGGGAGAAATGTCCTTTTGTGTGACCTGTATTGAACAG

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:1990050 phosphatidic acid transfer activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-654 Predicted to enable phosphatidic acid transfer activity. Predicted to be involved in phospholipid transport. Predicted to be active in mitochondrial intermembrane space. Orthologous to human PRELID3A (PRELI domain containing 3A).

Ensembl:

ensembl_id ENSDART00000183943

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022168 lncRNA downstream 37190 25238250 ~ 25241068 (-) True XLOC_010708
TCONS_00022167 lncRNA downstream 205366 25068504 ~ 25072892 (-) True XLOC_010704
TCONS_00020950 lncRNA downstream 265860 24999679 ~ 25012398 (-) True XLOC_010703
TCONS_00022166 lncRNA downstream 569671 24706769 ~ 24708587 (-) True XLOC_010700
TCONS_00020941 lncRNA downstream 605396 24671160 ~ 24672862 (-) True XLOC_010698
TCONS_00020958 lncRNA upstream 54467 25339936 ~ 25342126 (-) True XLOC_010711
TCONS_00020971 lncRNA upstream 219089 25504558 ~ 25507732 (-) False XLOC_010716
TCONS_00020970 lncRNA upstream 219089 25504558 ~ 25508977 (-) False XLOC_010716
TCONS_00020966 lncRNA upstream 219089 25504558 ~ 25512240 (-) False XLOC_010716
TCONS_00020981 lncRNA upstream 362047 25647516 ~ 25663820 (-) False XLOC_010720
TCONS_00020953 mRNA downstream 44743 25231963 ~ 25233515 (-) True XLOC_010707
TCONS_00020952 mRNA downstream 72210 25174628 ~ 25206048 (-) True XLOC_010706
TCONS_00020951 mRNA downstream 192931 25080764 ~ 25085327 (-) True XLOC_010705
TCONS_00020949 mRNA downstream 332921 24940377 ~ 24945337 (-) True XLOC_010702
TCONS_00020948 mRNA downstream 446220 24819118 ~ 24832038 (-) True XLOC_010701
TCONS_00020959 mRNA upstream 78844 25364313 ~ 25368048 (-) True XLOC_010712
TCONS_00020960 mRNA upstream 86184 25371653 ~ 25380969 (-) False XLOC_010713
TCONS_00020961 mRNA upstream 88245 25373714 ~ 25380903 (-) True XLOC_010713
TCONS_00020962 mRNA upstream 103034 25388503 ~ 25393699 (-) True XLOC_010714
TCONS_00020963 mRNA upstream 109294 25394763 ~ 25400257 (-) True XLOC_010715
TCONS_00020938 other downstream 619601 24656964 ~ 24658657 (-) True XLOC_010696
TCONS_00020920 other downstream 760218 24253203 ~ 24518040 (-) True XLOC_010689
TCONS_00020921 other downstream 883795 24394346 ~ 24394463 (-) True XLOC_010690
TCONS_00020907 other downstream 1685659 23592464 ~ 23592599 (-) True XLOC_010682
TCONS_00020906 other downstream 1754883 23523261 ~ 23523375 (-) True XLOC_010681
TCONS_00020957 other upstream 43062 25328531 ~ 25328647 (-) True XLOC_010710
TCONS_00020965 other upstream 219089 25504558 ~ 25509098 (-) False XLOC_010716
TCONS_00020982 other upstream 368226 25653695 ~ 25663669 (-) True XLOC_010720
TCONS_00021003 other upstream 1092828 26378297 ~ 26379442 (-) True XLOC_010732
TCONS_00021035 other upstream 2310093 27595562 ~ 27598677 (-) False XLOC_010752

Expression Profile

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