RNA id: TCONS_00021013


Basic Information

Item Value
RNA id TCONS_00021013
length 350
lncRNA type lincRNA
GC content 0.57
exon number 2
gene id XLOC_010737
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26601000 ~ 26601433 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACCTCGCTCGGCGGCCGAGCGTTTCTTTTTGACCGACGGCTAAACGTCCTGCGCAGAAAGCCCATCATCTTCCCCCGCGAGACAGCGCTTTAATTAATCAGGGAAAACGGCACCGATACCGGACCGCTCAAGAAGAAGGCATCCAGCTGTTTCCCAGGCTTTCCACGACGACGAAAGGCGGCGTCTACCGGACTCAGCCGTGCAATGCAGAGGGAAGAAGTCGGCGACCTGTCACGAGCTCCGTTTCCTCGTGTCGTACGGGCGACAAAACAAGAGCACACCTGCCAGAAGCCACGGGAAGATGAGAAGTCCAGGCTCAGCTGACTGATGTCGCGTTAGTTGCTCTCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154949

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021011 lncRNA downstream 64805 26532803 ~ 26536195 (-) False XLOC_010736
TCONS_00021006 lncRNA downstream 93596 26503093 ~ 26507404 (-) True XLOC_010734
TCONS_00021806 lncRNA downstream 221544 26371697 ~ 26379456 (-) False XLOC_010732
TCONS_00020984 lncRNA downstream 924535 25673657 ~ 25676465 (-) False XLOC_010721
TCONS_00020981 lncRNA downstream 937180 25647516 ~ 25663820 (-) False XLOC_010720
TCONS_00021014 lncRNA upstream 18180 26619613 ~ 26634978 (-) False XLOC_010738
TCONS_00022170 lncRNA upstream 18180 26619613 ~ 26642034 (-) False XLOC_010738
TCONS_00022169 lncRNA upstream 18180 26619613 ~ 26642034 (-) True XLOC_010738
TCONS_00022171 lncRNA upstream 118447 26719880 ~ 26727455 (-) False XLOC_010740
TCONS_00021018 lncRNA upstream 146320 26747753 ~ 26752205 (-) False XLOC_010741
TCONS_00021010 mRNA downstream 63886 26530426 ~ 26537114 (-) False XLOC_010736
TCONS_00021012 mRNA downstream 63897 26532906 ~ 26537103 (-) True XLOC_010736
TCONS_00021009 mRNA downstream 72858 26524010 ~ 26528142 (-) True XLOC_010735
TCONS_00021007 mRNA downstream 72860 26510630 ~ 26528140 (-) False XLOC_010735
TCONS_00021008 mRNA downstream 75099 26510988 ~ 26525901 (-) False XLOC_010735
TCONS_00021015 mRNA upstream 44230 26645663 ~ 26676685 (-) True XLOC_010739
TCONS_00021016 mRNA upstream 119305 26720738 ~ 26731928 (-) False XLOC_010740
TCONS_00021017 mRNA upstream 119735 26721168 ~ 26727032 (-) True XLOC_010740
TCONS_00021019 mRNA upstream 215320 26816753 ~ 26820634 (-) True XLOC_010742
TCONS_00021020 mRNA upstream 249048 26850481 ~ 26855945 (-) False XLOC_010743
TCONS_00021003 other downstream 221558 26378297 ~ 26379442 (-) True XLOC_010732
TCONS_00020982 other downstream 937331 25653695 ~ 25663669 (-) True XLOC_010720
TCONS_00020965 other downstream 1091902 25504558 ~ 25509098 (-) False XLOC_010716
TCONS_00020957 other downstream 1272353 25328531 ~ 25328647 (-) True XLOC_010710
TCONS_00020938 other downstream 1942343 24656964 ~ 24658657 (-) True XLOC_010696
TCONS_00021035 other upstream 994129 27595562 ~ 27598677 (-) False XLOC_010752
TCONS_00021057 other upstream 2197669 28799102 ~ 28808578 (-) False XLOC_010764
TCONS_00021070 other upstream 2554305 29155738 ~ 29155852 (-) True XLOC_010769
TCONS_00021083 other upstream 2914538 29515971 ~ 29530362 (-) True XLOC_010777
TCONS_00021089 other upstream 3088275 29689708 ~ 29690212 (-) True XLOC_010782

Expression Profile

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