RNA id: TCONS_00022172


Basic Information

Item Value
RNA id TCONS_00022172
length 407
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_010741
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26747753 ~ 26752205 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGGATTCCAGTCTATATCATATAAAACGAGGTGAGAGGCACCGATGAGGTTTAGTCCCACTCCTCCAGCTTTGGAGCTGAGCAGCAGTAGAAAGCTGGACGAATGTGGGCTGTTGAAGGAATCAACAATTTTCTGCCGCTGGCCAACTGGTGTCTGTCCATCAAGACGACACCATTTATAGCCTATCTGATCACAGACGTCCTGGAGTAAGTCAAGAGTCTGTGTGTGGTTGGACACCAAAACAACCCTAGGGAGAAAAAGACAGAAGAAACTGGACATAAGACTGATAATAAACTGGGCTGGCGAGATCGGAGAATGGGCTCTTCATAAATCTTCCTGTAGGCCGCAGATGTTCCCAGAATTCCTGGATTTACAAACTCGATGATTGAATAAAACTCCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022171 lncRNA downstream 21387 26719880 ~ 26727455 (-) False XLOC_010740
TCONS_00022170 lncRNA downstream 106808 26619613 ~ 26642034 (-) False XLOC_010738
TCONS_00022169 lncRNA downstream 106808 26619613 ~ 26642034 (-) True XLOC_010738
TCONS_00021014 lncRNA downstream 113864 26619613 ~ 26634978 (-) False XLOC_010738
TCONS_00021013 lncRNA downstream 147409 26601000 ~ 26601433 (-) True XLOC_010737
TCONS_00021028 lncRNA upstream 603335 27355418 ~ 27373866 (-) False XLOC_010748
TCONS_00021029 lncRNA upstream 609802 27361885 ~ 27373819 (-) True XLOC_010748
TCONS_00021036 lncRNA upstream 843479 27595562 ~ 27597910 (-) False XLOC_010752
TCONS_00021037 lncRNA upstream 843479 27595562 ~ 27598308 (-) False XLOC_010752
TCONS_00021038 lncRNA upstream 843479 27595562 ~ 27598382 (-) False XLOC_010752
TCONS_00021016 mRNA downstream 16914 26720738 ~ 26731928 (-) False XLOC_010740
TCONS_00021017 mRNA downstream 21810 26721168 ~ 26727032 (-) True XLOC_010740
TCONS_00021015 mRNA downstream 72157 26645663 ~ 26676685 (-) True XLOC_010739
TCONS_00021010 mRNA downstream 211728 26530426 ~ 26537114 (-) False XLOC_010736
TCONS_00021012 mRNA downstream 211739 26532906 ~ 26537103 (-) True XLOC_010736
TCONS_00021019 mRNA upstream 64670 26816753 ~ 26820634 (-) True XLOC_010742
TCONS_00021020 mRNA upstream 98398 26850481 ~ 26855945 (-) False XLOC_010743
TCONS_00021021 mRNA upstream 98399 26850482 ~ 26855936 (-) True XLOC_010743
TCONS_00021022 mRNA upstream 374390 27126473 ~ 27138478 (-) False XLOC_010744
TCONS_00021023 mRNA upstream 386097 27138180 ~ 27149202 (-) True XLOC_010744
TCONS_00021003 other downstream 369400 26378297 ~ 26379442 (-) True XLOC_010732
TCONS_00020982 other downstream 1085173 25653695 ~ 25663669 (-) True XLOC_010720
TCONS_00020965 other downstream 1239744 25504558 ~ 25509098 (-) False XLOC_010716
TCONS_00020957 other downstream 1420195 25328531 ~ 25328647 (-) True XLOC_010710
TCONS_00020938 other downstream 2090185 24656964 ~ 24658657 (-) True XLOC_010696
TCONS_00021035 other upstream 843479 27595562 ~ 27598677 (-) False XLOC_010752
TCONS_00021057 other upstream 2047019 28799102 ~ 28808578 (-) False XLOC_010764
TCONS_00021070 other upstream 2403655 29155738 ~ 29155852 (-) True XLOC_010769
TCONS_00021083 other upstream 2763888 29515971 ~ 29530362 (-) True XLOC_010777
TCONS_00021089 other upstream 2937625 29689708 ~ 29690212 (-) True XLOC_010782

Expression Profile

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