RNA id: TCONS_00022174


Basic Information

Item Value
RNA id TCONS_00022174
length 2327
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id XLOC_010779
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29531348 ~ 29538953 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAAAGAGCAGGAACAGAAACCGCATCTagccacactcacacacacacaccgagccAGGGAAGACGCCACATCGCTGGGCAGGGAAGCAAAATGGATACaggacaaactgtgaaaatgaaTGGATACAGGACATAAAGGAGACTCACAAAATGAGGGATTTCTGGGGTCCAGAGAACACAGAGTTATGAAACAACTGAAGATGAGATGGAAATCGTGGATGCTTGAGATGAACGGAGAAAGAGAAGGAGGGGAAGAGGGAAAAAATGGGCAGGGAAAAGGATGCGAAGCGACTGCGAGGCAACCTCAGATCCTCCACCCACAGAGCATCTATTAGACTGGAAATATACTCTTGTGCAAAACATACACTGCTATAAACGCATAAACAATGCTGTGAGACCTTGGAACTCAAGCTGAGGGTGTGTGATTGTTCTGCATGGACAGAAAGCAGATGTTTGCATAGATGTGTTTATTATGTTGTGCAATGCATATGGGTGTTTGAAGATCTCTGCTTTTGCTCTTGTTATTTTGTGCTTTAATTGGTATGAAGGTGGATGTATGTAGGCAGAATCATTTTGAAGTGTCTGTATTCAGTATTGTGAAGCAGAGTTTCTAGATGATTTACTTAATGCTGGTTTTGATTTGGAGAAGGCCTCCTGtcttaaatgattttaataaccaaaatctcattttaaaatttttattatttaattttaatgcacaaataaaatgatttaaatctGATTATGTCACGTTCTATTTCGAAAGTATTTCATCGTtgttttgcattaatttaaagtCGGTCAAATATAAATTTTACAGCTtaaatatatacttatttattttactgcaatTTAATTAGATTTGATCGAATTTAAACCTCACGAAATCATGTAAAATATTAGAAAtctttataatgtataataaacatgctgtattatatatatatagctggtTGTTAGACTCCGATTGCTAATAATTCACAATGGTAATAATAGATTGCCATCCTGCGTGTTGGCAGCACGCCCACGTTTCCCAATCGATAAACAGAACCAAATACACGGGCGCGCGCCTATTTGAATGCGGCTGAACACTTGCTGTGGCTCAGAGGTTAAATCGTAAAATCATAGAAAATATTATCCTTTAACATTGTGGCTGAGTTTGTGAATGTTACCGAACGTAGTAAACGTTACTAAAAGCTAAAAATGAGCATGACCTTAAAAGCAATTCAGTAGATTCCCCTAATACACTCTTCATATTTGAGGGGAATTAGAAATCTCTCAAACGATCTGTCTGAAAGTCGTCCTTTTTTATTTATCCtttgtattaaatacattcaaaaacattaaataggAGTTTTCATTTAAGTGTTTAATGTTAAGGCCTTTAGGTAGGCCATGTATTTGTGGTCTTTATATTGTGGATTCTCCTGATTGTCTTATATTAAAATTACGAGTCAAATGCATTTAGCTGAATTCATGGATAATGCGTATATATATAAtcgaaaattattttttaaacaaaacaatacatcCAGTGGACACAAGAAGGGGTATAGTATGACGATGCTTTTATAAGTTTGTCCGTCTGAAGATGtggcttatttttaatataactggtgctataattatttttagggtaaaaaaatcaatattttaacTTGAGCTTAATTTTAAACGTTGAAATCTACAAAATCTAACAACGTTCAATGAATCTTGAAGCTGAAGCATAAATTCCTATACTTTTTCTAGTGCAGTTTGCCAAATAATTTCCCCCCAAGAATAAATCAAATgttaatcttttttattatttatgcacaTTATTTATACATGCAGAATTTTACAATTTTCTAATTgttatttaaattgttatttagCAACCATTATCCTCCGTTCGAAATGGAAGTTTTTATAATTGTTAAGTTACAATGCAGCACAGCAGTCAGCtgcaaaaaagttttattttcatgtgattttttttttcatatttgccTGCTCTCCACGCGGTTCGAGCATGTTAATTGAGTTATTGACTTTTTTATCGATCGACTTCTTTTTATTATTCACCATGCGTCCTATTATTTTTGGACGAAATTAATTTGTTTTAGCCCCGCATTTGAATGCATGTTTTAGGTTGCAGGATGTATCGTATTTAATTTCTTTAGTATTACTCAACTATGTGTTTACGAACCCATGATTTTAATAAAGATATGAAATATGATCCTAACActaaaatatttgtgaaatattgatgAATAAAAAGATCATGGGTTAATTGCGGTTTTAAACGCatcaaaatagttacattttgaACGAATAAGTGACAATT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0007517 muscle organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0014902 myotube differentiation biological_process
GO:0014904 myotube cell development biological_process
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0042559 pteridine-containing compound biosynthetic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0034312 diol biosynthetic process biological_process
GO:0046146 tetrahydrobiopterin metabolic process biological_process
GO:0003013 circulatory system process biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0032502 developmental process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0005901 caveola cellular_component
GO:0005112 Notch binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021068 lncRNA downstream 367117 29135068 ~ 29164231 (-) False XLOC_010768
TCONS_00021067 lncRNA downstream 423787 29096898 ~ 29107561 (-) False XLOC_010768
TCONS_00021808 lncRNA downstream 489247 29030682 ~ 29042101 (-) False XLOC_010767
TCONS_00021062 lncRNA downstream 495368 29030937 ~ 29035980 (-) True XLOC_010767
TCONS_00022173 lncRNA downstream 1524412 27977966 ~ 28006936 (-) True XLOC_010756
TCONS_00022176 lncRNA upstream 113540 29647214 ~ 29650725 (-) True XLOC_010781
TCONS_00021809 lncRNA upstream 385921 29919595 ~ 29921770 (-) True XLOC_010784
TCONS_00021095 lncRNA upstream 885796 30419470 ~ 30421222 (-) True XLOC_010785
TCONS_00021097 lncRNA upstream 970842 30504516 ~ 30519239 (-) False XLOC_010787
TCONS_00022177 lncRNA upstream 984467 30518141 ~ 30519219 (-) True XLOC_010787
TCONS_00021084 mRNA downstream 3150 29521736 ~ 29528198 (-) False XLOC_010778
TCONS_00021085 mRNA downstream 3936 29523132 ~ 29527412 (-) True XLOC_010778
TCONS_00021081 mRNA downstream 51013 29455974 ~ 29480335 (-) False XLOC_010776
TCONS_00021082 mRNA downstream 72542 29456918 ~ 29458806 (-) True XLOC_010776
TCONS_00021080 mRNA downstream 79309 29407666 ~ 29452039 (-) True XLOC_010775
TCONS_00021086 mRNA upstream 17349 29551023 ~ 29557338 (-) True XLOC_010780
TCONS_00021087 mRNA upstream 151883 29685557 ~ 29690188 (-) False XLOC_010782
TCONS_00021088 mRNA upstream 152207 29685881 ~ 29690196 (-) False XLOC_010782
TCONS_00021090 mRNA upstream 164891 29698565 ~ 29702447 (-) False XLOC_010783
TCONS_00021091 mRNA upstream 165537 29699211 ~ 29714540 (-) True XLOC_010783
TCONS_00021083 other downstream 986 29515971 ~ 29530362 (-) True XLOC_010777
TCONS_00021070 other downstream 375496 29155738 ~ 29155852 (-) True XLOC_010769
TCONS_00021057 other downstream 722770 28799102 ~ 28808578 (-) False XLOC_010764
TCONS_00021035 other downstream 1932671 27595562 ~ 27598677 (-) False XLOC_010752
TCONS_00021003 other downstream 3151906 26378297 ~ 26379442 (-) True XLOC_010732
TCONS_00021089 other upstream 156034 29689708 ~ 29690212 (-) True XLOC_010782
TCONS_00021093 other upstream 884180 30417854 ~ 30421018 (-) False XLOC_010785
TCONS_00021094 other upstream 885490 30419164 ~ 30420703 (-) False XLOC_010785
TCONS_00021103 other upstream 1024035 30557709 ~ 30564289 (-) True XLOC_010788
TCONS_00021106 other upstream 1114713 30648387 ~ 30648504 (-) True XLOC_010791

Expression Profile

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