RNA id: TCONS_00022176


Basic Information

Item Value
RNA id TCONS_00022176
length 540
lncRNA type read_through
GC content 0.48
exon number 2
gene id XLOC_010781
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29647214 ~ 29650725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGTCCATATTCACCGGCTTCAGTAACTCAGGTTTACTTACTAAATAAATGCTCTTTGCAGTGGTGTCTGCTGGAGTGGATGGGCCAGTGCAGGGCAGGCCATGAGCAGCCACATACTTCTTATAGGCCTCCCGAATTATCCTGAAGGCCTGTACATTAGCGTAAGGAATGTCAGTGATGGGGTCCCGGTAGAGCGCAGGCTTATGGGTAACAGGACAGACCTCCTGGACAGGTACTCGAGGAGCAGGCGACTGGGGAAAGACACGCTGGAAGGACTCATCATCACTGAATGTGATGTAGGTGCGAGAGCATTTGGTGTTTACAGCAGCTGTGTTTGTGAATGGGACACCGGGTGCTGCGGAAAGCGTTGATTCGGACTGGGAAAGAGCCTGTGGCAGGTGAGGATTCTGCTGGGCGTCCTGGTCCAAACTGAAATAGATATAAAGCAAAGCAAATTTACATTTACACCACATTGTtttcagcaaaaaacaaaacaaaaatgttgtctatgcattttgccatttatttacacaaaacag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022175 lncRNA downstream 108261 29531348 ~ 29538953 (-) True XLOC_010779
TCONS_00022174 lncRNA downstream 113540 29531348 ~ 29533674 (-) False XLOC_010779
TCONS_00021068 lncRNA downstream 482983 29135068 ~ 29164231 (-) False XLOC_010768
TCONS_00021067 lncRNA downstream 539653 29096898 ~ 29107561 (-) False XLOC_010768
TCONS_00021808 lncRNA downstream 605113 29030682 ~ 29042101 (-) False XLOC_010767
TCONS_00021809 lncRNA upstream 268870 29919595 ~ 29921770 (-) True XLOC_010784
TCONS_00021095 lncRNA upstream 768745 30419470 ~ 30421222 (-) True XLOC_010785
TCONS_00021097 lncRNA upstream 853791 30504516 ~ 30519239 (-) False XLOC_010787
TCONS_00022177 lncRNA upstream 867416 30518141 ~ 30519219 (-) True XLOC_010787
TCONS_00021102 lncRNA upstream 874787 30525512 ~ 30529738 (-) False XLOC_010788
TCONS_00021086 mRNA downstream 89876 29551023 ~ 29557338 (-) True XLOC_010780
TCONS_00021084 mRNA downstream 119016 29521736 ~ 29528198 (-) False XLOC_010778
TCONS_00021085 mRNA downstream 119802 29523132 ~ 29527412 (-) True XLOC_010778
TCONS_00021081 mRNA downstream 166879 29455974 ~ 29480335 (-) False XLOC_010776
TCONS_00021082 mRNA downstream 188408 29456918 ~ 29458806 (-) True XLOC_010776
TCONS_00021087 mRNA upstream 34832 29685557 ~ 29690188 (-) False XLOC_010782
TCONS_00021088 mRNA upstream 35156 29685881 ~ 29690196 (-) False XLOC_010782
TCONS_00021090 mRNA upstream 47840 29698565 ~ 29702447 (-) False XLOC_010783
TCONS_00021091 mRNA upstream 48486 29699211 ~ 29714540 (-) True XLOC_010783
TCONS_00021092 mRNA upstream 757972 30408697 ~ 30421275 (-) False XLOC_010785
TCONS_00021083 other downstream 116852 29515971 ~ 29530362 (-) True XLOC_010777
TCONS_00021070 other downstream 491362 29155738 ~ 29155852 (-) True XLOC_010769
TCONS_00021057 other downstream 838636 28799102 ~ 28808578 (-) False XLOC_010764
TCONS_00021035 other downstream 2048537 27595562 ~ 27598677 (-) False XLOC_010752
TCONS_00021003 other downstream 3267772 26378297 ~ 26379442 (-) True XLOC_010732
TCONS_00021089 other upstream 38983 29689708 ~ 29690212 (-) True XLOC_010782
TCONS_00021093 other upstream 767129 30417854 ~ 30421018 (-) False XLOC_010785
TCONS_00021094 other upstream 768439 30419164 ~ 30420703 (-) False XLOC_010785
TCONS_00021103 other upstream 906984 30557709 ~ 30564289 (-) True XLOC_010788
TCONS_00021106 other upstream 997662 30648387 ~ 30648504 (-) True XLOC_010791

Expression Profile

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