RNA id: TCONS_00021809


Basic Information

Item Value
RNA id TCONS_00021809
length 1143
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id XLOC_010784
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29919595 ~ 29921770 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aattgaaggtcgggtgttgctgactacagataagttcttaaatggaggcatgtgaaagcaaggaaagtgaaacttcagctagaccttgagttcagtttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgaggtaaaaaatagataagtaaatgaaacataataataatattaatacattttttctagatttttctagaaattgtatattttgtggtgtgggtttgttttatgaaattctctcttgtttctttttactgtttgcagagtaccaacatgttacaaatgagaattttccccacaaattctttgcacaactggaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggcaagacagcagattccctggctaatcttttaaaggtttatgatgagcaggtatgtttggggtcacgtgttaaagtatacattaaaatataattagaatttttattattattttttttaaatttttaaaaaattgattcttgatttccaggaactgcatgatgtcagttcatgacggactactgttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccctgattgataatcctgctgactgaagatgctttattggccctgcattcactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttgtatggattaatcggactccagctcgtgacgatccttcacccgactactcactgtccttcacctacttcccggagcaccagagcacctcaccttaaagaagagcaccttttacaccacccacactttgtaaataaagcaccctccggggacttgtctgtaaactcatcctactgtgtcgctgttttccctctgcctcgctacaatatatatatagatttttatatatatatatatatatatatatatatatatatatatatatataaaatctgctctccgttaaacagaaattgggggaaaaaataaatgggggcgaataattctgacttcaactatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0048699 generation of neurons biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022176 lncRNA downstream 268870 29647214 ~ 29650725 (-) True XLOC_010781
TCONS_00022175 lncRNA downstream 380642 29531348 ~ 29538953 (-) True XLOC_010779
TCONS_00022174 lncRNA downstream 385921 29531348 ~ 29533674 (-) False XLOC_010779
TCONS_00021068 lncRNA downstream 755364 29135068 ~ 29164231 (-) False XLOC_010768
TCONS_00021067 lncRNA downstream 812034 29096898 ~ 29107561 (-) False XLOC_010768
TCONS_00021095 lncRNA upstream 497700 30419470 ~ 30421222 (-) True XLOC_010785
TCONS_00021097 lncRNA upstream 582746 30504516 ~ 30519239 (-) False XLOC_010787
TCONS_00022177 lncRNA upstream 596371 30518141 ~ 30519219 (-) True XLOC_010787
TCONS_00021102 lncRNA upstream 603742 30525512 ~ 30529738 (-) False XLOC_010788
TCONS_00021117 lncRNA upstream 815765 30737535 ~ 30753957 (-) False XLOC_010792
TCONS_00021091 mRNA downstream 205055 29699211 ~ 29714540 (-) True XLOC_010783
TCONS_00021090 mRNA downstream 217148 29698565 ~ 29702447 (-) False XLOC_010783
TCONS_00021088 mRNA downstream 229399 29685881 ~ 29690196 (-) False XLOC_010782
TCONS_00021087 mRNA downstream 229407 29685557 ~ 29690188 (-) False XLOC_010782
TCONS_00021086 mRNA downstream 362257 29551023 ~ 29557338 (-) True XLOC_010780
TCONS_00021092 mRNA upstream 486927 30408697 ~ 30421275 (-) False XLOC_010785
TCONS_00021096 mRNA upstream 500711 30422481 ~ 30434279 (-) True XLOC_010786
TCONS_00021099 mRNA upstream 598587 30520357 ~ 30570161 (-) False XLOC_010788
TCONS_00021098 mRNA upstream 598587 30520357 ~ 30570161 (-) False XLOC_010788
TCONS_00021100 mRNA upstream 599087 30520857 ~ 30564319 (-) False XLOC_010788
TCONS_00021089 other downstream 229383 29689708 ~ 29690212 (-) True XLOC_010782
TCONS_00021083 other downstream 389233 29515971 ~ 29530362 (-) True XLOC_010777
TCONS_00021070 other downstream 763743 29155738 ~ 29155852 (-) True XLOC_010769
TCONS_00021057 other downstream 1111017 28799102 ~ 28808578 (-) False XLOC_010764
TCONS_00021035 other downstream 2320918 27595562 ~ 27598677 (-) False XLOC_010752
TCONS_00021093 other upstream 496084 30417854 ~ 30421018 (-) False XLOC_010785
TCONS_00021094 other upstream 497394 30419164 ~ 30420703 (-) False XLOC_010785
TCONS_00021103 other upstream 635939 30557709 ~ 30564289 (-) True XLOC_010788
TCONS_00021106 other upstream 726617 30648387 ~ 30648504 (-) True XLOC_010791
TCONS_00021115 other upstream 815765 30737535 ~ 30774911 (-) False XLOC_010792

Expression Profile

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