RNA id: TCONS_00021094


Basic Information

Item Value
RNA id TCONS_00021094
length 570
RNA type processed_transcript
GC content 0.45
exon number 5
gene id XLOC_010785
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30408697 ~ 30421275 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGTCTTGGCTTGGTGTTAGGTTTTAAGGCAGTGAatgttatttgaatttttttagtGAATGAAGAGTTTAGAGTTCATCATATGAAGAAGCAGATTTAATGCCCATTGGCTCTGTTTTTGGTACAGGTCAGAACATCAAGAGAGAATCTGGACGGAAGGTCCAGATTGGAAACATCTCTGCGGCTAAGACCATAGCAGACATCATCAGGACATGCCTAGGACCAAGGGCTATGATGAAGATGCTGCTGGATCCCATGGGTGGTCGGGTGAGATGCTGTCAGTGGCTGAGCAGTTTTTGGAGCAGCAGATGCATCCTACTGTGGTGATCGGTGCATACAGACAAGCTCTGGATGACATGTTGAACATACTCAAAGACATAAGCACTCCAGTAGATGTGAGTAATCGAGACATGATGTTGAAGATAATAAACTCTGCAATCAACACCAAAGCACTCAGCCGCTGGTCCACATTGGCCTGTAACATCGCTCTGGATGCTGTCCGTACTGTTGAGCTGGAGGAAAATGGACGCAAAGAGATTGACATTAAGAAGTATGCCAAAGTTGAAAAG

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0046671 negative regulation of retinal cell programmed cell death biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts
ko03036 Chromosome and associated proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-020419-5 Predicted to enable unfolded protein binding activity. Acts upstream of or within embryonic eye morphogenesis and negative regulation of retinal cell programmed cell death. Predicted to be part of chaperonin-containing T-complex. Orthologous to human CCT3 (chaperonin containing TCP1 subunit 3).

Ensembl:

ensembl_id ENSDART00000134538

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021809 lncRNA downstream 497394 29919595 ~ 29921770 (-) True XLOC_010784
TCONS_00022176 lncRNA downstream 768439 29647214 ~ 29650725 (-) True XLOC_010781
TCONS_00022175 lncRNA downstream 880211 29531348 ~ 29538953 (-) True XLOC_010779
TCONS_00022174 lncRNA downstream 885490 29531348 ~ 29533674 (-) False XLOC_010779
TCONS_00021068 lncRNA downstream 1254933 29135068 ~ 29164231 (-) False XLOC_010768
TCONS_00021097 lncRNA upstream 83813 30504516 ~ 30519239 (-) False XLOC_010787
TCONS_00022177 lncRNA upstream 97438 30518141 ~ 30519219 (-) True XLOC_010787
TCONS_00021102 lncRNA upstream 104809 30525512 ~ 30529738 (-) False XLOC_010788
TCONS_00021117 lncRNA upstream 316832 30737535 ~ 30753957 (-) False XLOC_010792
TCONS_00021119 lncRNA upstream 327342 30748045 ~ 30753937 (-) False XLOC_010792
TCONS_00021091 mRNA downstream 704624 29699211 ~ 29714540 (-) True XLOC_010783
TCONS_00021090 mRNA downstream 716717 29698565 ~ 29702447 (-) False XLOC_010783
TCONS_00021088 mRNA downstream 728968 29685881 ~ 29690196 (-) False XLOC_010782
TCONS_00021087 mRNA downstream 728976 29685557 ~ 29690188 (-) False XLOC_010782
TCONS_00021086 mRNA downstream 861826 29551023 ~ 29557338 (-) True XLOC_010780
TCONS_00021096 mRNA upstream 1778 30422481 ~ 30434279 (-) True XLOC_010786
TCONS_00021099 mRNA upstream 99654 30520357 ~ 30570161 (-) False XLOC_010788
TCONS_00021098 mRNA upstream 99654 30520357 ~ 30570161 (-) False XLOC_010788
TCONS_00021100 mRNA upstream 100154 30520857 ~ 30564319 (-) False XLOC_010788
TCONS_00021101 mRNA upstream 102512 30523215 ~ 30563129 (-) False XLOC_010788
TCONS_00021089 other downstream 728952 29689708 ~ 29690212 (-) True XLOC_010782
TCONS_00021083 other downstream 888802 29515971 ~ 29530362 (-) True XLOC_010777
TCONS_00021070 other downstream 1263312 29155738 ~ 29155852 (-) True XLOC_010769
TCONS_00021057 other downstream 1610586 28799102 ~ 28808578 (-) False XLOC_010764
TCONS_00021035 other downstream 2820487 27595562 ~ 27598677 (-) False XLOC_010752
TCONS_00021103 other upstream 137006 30557709 ~ 30564289 (-) True XLOC_010788
TCONS_00021106 other upstream 227684 30648387 ~ 30648504 (-) True XLOC_010791
TCONS_00021115 other upstream 316832 30737535 ~ 30774911 (-) False XLOC_010792
TCONS_00021118 other upstream 319948 30740651 ~ 30774926 (-) False XLOC_010792
TCONS_00021120 other upstream 337657 30758360 ~ 30772432 (-) False XLOC_010792

Expression Profile

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