RNA id: TCONS_00022177


Basic Information

Item Value
RNA id TCONS_00022177
length 399
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_010787
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30504516 ~ 30519239 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCAGTCAACCCAAATGCGTCTTTCGAAGCTTTTATGTGAAAAGGTTGCTTTTACCGAAATCACTTGACTTTGTCAAACAAAATACCACAGCGTTTCTCTTTCCAAAAAAGTACACGAGACGAcataaagTCTTTGGCAGTGATTTTAGAGAAGAGTCTTTGGGTTTGGAGAGAAAAGGATCAGTTTGGCAGTCTGCGTGGCGATGGTGAAGGTGGTCTGCGCACCGGGGGCAAGTCATAATGCCCAGGAATGTGGCTGTTGATGGGCAGATCATAGTGATTCTGAAGTTCCTGTTCTTCAGCATTGCTAAGGGAACAGTGTCCTGAAATACAGCGAACAAACACATTGtaaacagtacagtacagtaacttattacattaaaaatgacattattaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021095 lncRNA downstream 96919 30419470 ~ 30421222 (-) True XLOC_010785
TCONS_00021809 lncRNA downstream 596371 29919595 ~ 29921770 (-) True XLOC_010784
TCONS_00022176 lncRNA downstream 867416 29647214 ~ 29650725 (-) True XLOC_010781
TCONS_00022175 lncRNA downstream 979188 29531348 ~ 29538953 (-) True XLOC_010779
TCONS_00022174 lncRNA downstream 984467 29531348 ~ 29533674 (-) False XLOC_010779
TCONS_00021102 lncRNA upstream 6293 30525512 ~ 30529738 (-) False XLOC_010788
TCONS_00021117 lncRNA upstream 218316 30737535 ~ 30753957 (-) False XLOC_010792
TCONS_00021119 lncRNA upstream 228826 30748045 ~ 30753937 (-) False XLOC_010792
TCONS_00022178 lncRNA upstream 239141 30758360 ~ 30788545 (-) False XLOC_010792
TCONS_00022179 lncRNA upstream 647767 31166986 ~ 31169382 (-) True XLOC_010798
TCONS_00021096 mRNA downstream 83862 30422481 ~ 30434279 (-) True XLOC_010786
TCONS_00021092 mRNA downstream 96866 30408697 ~ 30421275 (-) False XLOC_010785
TCONS_00021091 mRNA downstream 803601 29699211 ~ 29714540 (-) True XLOC_010783
TCONS_00021090 mRNA downstream 815694 29698565 ~ 29702447 (-) False XLOC_010783
TCONS_00021088 mRNA downstream 827945 29685881 ~ 29690196 (-) False XLOC_010782
TCONS_00021099 mRNA upstream 1138 30520357 ~ 30570161 (-) False XLOC_010788
TCONS_00021098 mRNA upstream 1138 30520357 ~ 30570161 (-) False XLOC_010788
TCONS_00021100 mRNA upstream 1638 30520857 ~ 30564319 (-) False XLOC_010788
TCONS_00021101 mRNA upstream 3996 30523215 ~ 30563129 (-) False XLOC_010788
TCONS_00021104 mRNA upstream 63770 30582989 ~ 30584279 (-) True XLOC_010789
TCONS_00021093 other downstream 97123 30417854 ~ 30421018 (-) False XLOC_010785
TCONS_00021094 other downstream 97438 30419164 ~ 30420703 (-) False XLOC_010785
TCONS_00021089 other downstream 827929 29689708 ~ 29690212 (-) True XLOC_010782
TCONS_00021083 other downstream 987779 29515971 ~ 29530362 (-) True XLOC_010777
TCONS_00021070 other downstream 1362289 29155738 ~ 29155852 (-) True XLOC_010769
TCONS_00021103 other upstream 38490 30557709 ~ 30564289 (-) True XLOC_010788
TCONS_00021106 other upstream 129168 30648387 ~ 30648504 (-) True XLOC_010791
TCONS_00021115 other upstream 218316 30737535 ~ 30774911 (-) False XLOC_010792
TCONS_00021118 other upstream 221432 30740651 ~ 30774926 (-) False XLOC_010792
TCONS_00021120 other upstream 239141 30758360 ~ 30772432 (-) False XLOC_010792