RNA id: TCONS_00021103


Basic Information

Item Value
RNA id TCONS_00021103
length 688
RNA type processed_transcript
GC content 0.52
exon number 3
gene id XLOC_010788
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30520357 ~ 30570161 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCAGCGGGACACAGCAGCTGTAGGAGCTTCAATAACCCAAACTCTCTCTCTCAGCTTTACCAGtaTCAGTAGTTCCAGACAACCATGGAGACTCCAGGTCAGAAACGAAGCAGCCGCGGTGGGGTGACCAATGTCCTGTCCCCTACCCGCATCTCTCGATTGCAGGAAAAGGAGGACTTGAGCAACCTGAATGACCGTCTGGCGGTCTACATCGATAAGGTTCGCTCTCTGGAGGTGGAGAACGCAGGTCTGCGTATGCGCATCACTGAATCCGAGACGGAGATCAGCCGGGAGCTGAGTGGCATGAAAGCGGCGTACGAGGCTGAACTCGCAGATGCCAGGAAAACACTGGACTCGGTGGCCAAAGAACGAGCCAGACTGCAACTGGAGCTCAGCAAAGTGCGTGAGGACTACAAGGAGCTGAAGGCCAGGGTTACAGTGGCCCTCGTGAGTTCCGGTGAGCATCAGTAACTCAGTTAATGCAGATGGACTTATTCACTCATTGAAGCTGAGCTGTTTGGCAGTGTTTGGTCTCCATGGTAACAGTGTGCTCTAGCCAGGGAGTGTGAGAGGATCTGACTGGACTGAGCGGTGACTCATGAGCTTTAAGTGACTATTGGGGGAAACACTGTTTACTCTCACTTTAACCCCTCACCTATTTAAGAAAATCTTTTTTCTTACTGAA

Function

GO:

id name namespace
GO:0090342 regulation of cell aging biological_process
GO:0060047 heart contraction biological_process
GO:0005882 intermediate filament cellular_component

KEGG:

id description
ko04210 Apoptosis
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-020424-3 Acts upstream of or within heart contraction and regulation of cell aging. Predicted to be located in intermediate filament. Is expressed in several structures, including fin; head; mesoderm; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Charcot-Marie-Tooth disease type 2B1; intrinsic cardiomyopathy (multiple); lipodystrophy (multiple); muscular dystrophy (multiple); and type 2 diabetes mellitus (multiple). Orthologous to human LMNA (lamin A/C).

Ensembl:

ensembl_id ENSDART00000147986

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021102 lncRNA downstream 27971 30525512 ~ 30529738 (-) False XLOC_010788
TCONS_00021097 lncRNA downstream 38470 30504516 ~ 30519239 (-) False XLOC_010787
TCONS_00022177 lncRNA downstream 38490 30518141 ~ 30519219 (-) True XLOC_010787
TCONS_00021095 lncRNA downstream 136487 30419470 ~ 30421222 (-) True XLOC_010785
TCONS_00021809 lncRNA downstream 635939 29919595 ~ 29921770 (-) True XLOC_010784
TCONS_00021117 lncRNA upstream 173246 30737535 ~ 30753957 (-) False XLOC_010792
TCONS_00021119 lncRNA upstream 183756 30748045 ~ 30753937 (-) False XLOC_010792
TCONS_00022178 lncRNA upstream 194071 30758360 ~ 30788545 (-) False XLOC_010792
TCONS_00022179 lncRNA upstream 602697 31166986 ~ 31169382 (-) True XLOC_010798
TCONS_00022180 lncRNA upstream 679491 31243780 ~ 31244681 (-) True XLOC_010800
TCONS_00021096 mRNA downstream 123430 30422481 ~ 30434279 (-) True XLOC_010786
TCONS_00021092 mRNA downstream 136434 30408697 ~ 30421275 (-) False XLOC_010785
TCONS_00021091 mRNA downstream 843169 29699211 ~ 29714540 (-) True XLOC_010783
TCONS_00021090 mRNA downstream 855262 29698565 ~ 29702447 (-) False XLOC_010783
TCONS_00021088 mRNA downstream 867513 29685881 ~ 29690196 (-) False XLOC_010782
TCONS_00021104 mRNA upstream 18700 30582989 ~ 30584279 (-) True XLOC_010789
TCONS_00021105 mRNA upstream 57395 30621684 ~ 30655980 (-) True XLOC_010790
TCONS_00021107 mRNA upstream 171137 30735426 ~ 30833519 (-) False XLOC_010792
TCONS_00021109 mRNA upstream 171137 30735426 ~ 30847192 (-) False XLOC_010792
TCONS_00021108 mRNA upstream 171137 30735426 ~ 30847192 (-) False XLOC_010792
TCONS_00021093 other downstream 136691 30417854 ~ 30421018 (-) False XLOC_010785
TCONS_00021094 other downstream 137006 30419164 ~ 30420703 (-) False XLOC_010785
TCONS_00021089 other downstream 867497 29689708 ~ 29690212 (-) True XLOC_010782
TCONS_00021083 other downstream 1027347 29515971 ~ 29530362 (-) True XLOC_010777
TCONS_00021070 other downstream 1401857 29155738 ~ 29155852 (-) True XLOC_010769
TCONS_00021106 other upstream 84098 30648387 ~ 30648504 (-) True XLOC_010791
TCONS_00021115 other upstream 173246 30737535 ~ 30774911 (-) False XLOC_010792
TCONS_00021118 other upstream 176362 30740651 ~ 30774926 (-) False XLOC_010792
TCONS_00021120 other upstream 194071 30758360 ~ 30772432 (-) False XLOC_010792
TCONS_00021121 other upstream 207880 30772169 ~ 30786112 (-) False XLOC_010792

Expression Profile

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