Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00021115 |
| length | 885 |
| RNA type | processed_transcript |
| GC content | 0.51 |
| exon number | 5 |
| gene id | XLOC_010792 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 30735426 ~ 30870170 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:0021555 | midbrain-hindbrain boundary morphogenesis | biological_process |
| GO:0042127 | regulation of cell population proliferation | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0030155 | regulation of cell adhesion | biological_process |
| GO:0038083 | peptidyl-tyrosine autophosphorylation | biological_process |
| GO:0070309 | lens fiber cell morphogenesis | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0007172 | signal complex assembly | biological_process |
| GO:0007173 | epidermal growth factor receptor signaling pathway | biological_process |
| GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005925 | focal adhesion | cellular_component |
| GO:0043197 | dendritic spine | cellular_component |
| GO:0005102 | signaling receptor binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004715 | non-membrane spanning protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-020114-1 | Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Acts upstream of or within with a positive effect on midbrain-hindbrain boundary morphogenesis. Acts upstream of or within lens fiber cell morphogenesis. Predicted to be located in cell junction; cell projection; and cytoskeleton. Predicted to be active in dendritic spine and focal adhesion. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in eye; notochord; segmental plate; somite; and vertical myoseptum. Human ortholog(s) of this gene implicated in leiomyoma; lung small cell carcinoma; and pulmonary hypertension. Orthologous to human PTK2 (protein tyrosine kinase 2). |
| ensembl_id | ENSDART00000137745 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021102 | lncRNA | downstream | 207797 | 30525512 ~ 30529738 (-) | False | XLOC_010788 |
| TCONS_00021097 | lncRNA | downstream | 218296 | 30504516 ~ 30519239 (-) | False | XLOC_010787 |
| TCONS_00022177 | lncRNA | downstream | 218316 | 30518141 ~ 30519219 (-) | True | XLOC_010787 |
| TCONS_00021095 | lncRNA | downstream | 316313 | 30419470 ~ 30421222 (-) | True | XLOC_010785 |
| TCONS_00021809 | lncRNA | downstream | 815765 | 29919595 ~ 29921770 (-) | True | XLOC_010784 |
| TCONS_00022179 | lncRNA | upstream | 392075 | 31166986 ~ 31169382 (-) | True | XLOC_010798 |
| TCONS_00022180 | lncRNA | upstream | 468869 | 31243780 ~ 31244681 (-) | True | XLOC_010800 |
| TCONS_00021141 | lncRNA | upstream | 610172 | 31385083 ~ 31407686 (-) | True | XLOC_010802 |
| TCONS_00021153 | lncRNA | upstream | 733916 | 31508827 ~ 31511707 (-) | True | XLOC_010805 |
| TCONS_00021161 | lncRNA | upstream | 851583 | 31626494 ~ 31628157 (-) | True | XLOC_010809 |
| TCONS_00021105 | mRNA | downstream | 81555 | 30621684 ~ 30655980 (-) | True | XLOC_010790 |
| TCONS_00021104 | mRNA | downstream | 153256 | 30582989 ~ 30584279 (-) | True | XLOC_010789 |
| TCONS_00021099 | mRNA | downstream | 167374 | 30520357 ~ 30570161 (-) | False | XLOC_010788 |
| TCONS_00021123 | mRNA | upstream | 96703 | 30871614 ~ 30880236 (-) | False | XLOC_010793 |
| TCONS_00021124 | mRNA | upstream | 100309 | 30875220 ~ 30878521 (-) | False | XLOC_010793 |
| TCONS_00021125 | mRNA | upstream | 105142 | 30880053 ~ 30885838 (-) | True | XLOC_010793 |
| TCONS_00021126 | mRNA | upstream | 118829 | 30893740 ~ 30903930 (-) | False | XLOC_010794 |
| TCONS_00021127 | mRNA | upstream | 124548 | 30899459 ~ 30901159 (-) | True | XLOC_010794 |
| TCONS_00021106 | other | downstream | 89031 | 30648387 ~ 30648504 (-) | True | XLOC_010791 |
| TCONS_00021103 | other | downstream | 173246 | 30557709 ~ 30564289 (-) | True | XLOC_010788 |
| TCONS_00021093 | other | downstream | 316517 | 30417854 ~ 30421018 (-) | False | XLOC_010785 |
| TCONS_00021094 | other | downstream | 316832 | 30419164 ~ 30420703 (-) | False | XLOC_010785 |
| TCONS_00021089 | other | downstream | 1047323 | 29689708 ~ 29690212 (-) | True | XLOC_010782 |
| TCONS_00021143 | other | upstream | 657936 | 31432847 ~ 31435020 (-) | False | XLOC_010803 |
| TCONS_00021159 | other | upstream | 849064 | 31623975 ~ 31628687 (-) | False | XLOC_010809 |
| TCONS_00021160 | other | upstream | 851091 | 31626002 ~ 31628184 (-) | False | XLOC_010809 |
| TCONS_00021163 | other | upstream | 871479 | 31646390 ~ 31651183 (-) | True | XLOC_010811 |
| TCONS_00021178 | other | upstream | 1130945 | 31905856 ~ 31914700 (-) | True | XLOC_010822 |
